Salmo salar (Atlantic salmon): 106595461
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Entry
106595461 CDS
T04363
Name
(RefSeq) putative RNA exonuclease NEF-sp
KO
K09228
KRAB domain-containing zinc finger protein
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
106595461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106595461
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106595461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_jaz
zf-C2H2_11
RRM_1
zf-Di19
zf-C2HE
Zn-ribbon_8
zf-C2H2_6
zf-C2HC_2
Phosphodiest
zinc_ribbon_9
Motif
Other DBs
NCBI-GeneID:
106595461
NCBI-ProteinID:
XP_014042309
UniProt:
A0A1S3QSE4
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All DBs
Position
ssa02:71509817..71534440
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AA seq
1333 aa
AA seq
DB search
MYQPPVNRETSTHNNNRFAQALKSSGQSAVVIGKRADITLDLSNQQWHSSDREVLSSFKR
GLESHSFSVVQLSSFSDHLMSMISTDQHYHTMSQRLREMCVVFAGPLPSDYTERDVRRLF
RSCGNVQAVRLLNATQRVHAEVEFELLEGAVLAVEMLNGTLLHTRHILKVQRPVKESMLD
LDVFLSCLQDDLLSANVIYAAGLKANAKTARLAAKVNGTGLNANAATEVNETGLNANAAA
KVNGTGLNANIAAIPAKVNRARLHAKANHSGLLEKVNGTLLNAKAKLAEANGPGLHTKAK
FAKIAELSAEVNGTLLKAKTMLAEIAAEANVGARLHAKTAGLCEEDLCKAFGQYGTVQGV
ILPANHSGKQKRRRHAFIKYDSPDTVDAVLSSPVELWDRKVSTLRALTPPHLRSWVTMMT
TTGSDRETPDESSQETGREEQEVACVMRKLDRRVGKLFRSLPDNTLSIVLLPGHNRYSIV
LPLTALSLLPHEQDNMNPLSSEKETLIDEIEQSLFTLTEDNLCYLCERHGNDGSEIKGMN
HRLLRRRIMEEMWDNTDSMKSEEQGMSWLVQLKDDIRRMLEIASGAPMSPSQSDDDDAVD
CDEECDGDSDWLPSNGLKVEHLSSSQSDDDAADCDEEFDMEDNYWLDSNGLGPESDPERH
TPEQRNKLSTSHSALPKSPGRASPSSVLLLSLKRVSVRLVDCMKTAGQSGHIIHKTTQTG
ENPHSSSAEQRNETLSGDSPSSHICDHCGKNFTTARSLKLHLQYLKKYRDNLTGEKPHVC
STCGKGFSEAGSLKRHLRTHTGEKPYVCHHCGKAWSDSGNLRRHMRKTHPGEKVVVMSVL
TGEKPYHCSSDDCGMSFGTSRKRRLHQRKHTREKLCSTPNAKQRKEPLSGDGSHICDHCG
KSFITARSLKRHLQYLKRYRENLTGEKPHVCSTCAKGFSEAGSLKRHLKTHTGEKPYVCH
HCGKNYNDSGNLQRHIRTHTGEKPYHCSECGRNFREKISLIHHREIVHTEHPHRCAHCMK
SFVSAFKLESHMQTRHPPNDPLKKPHVCSECGRGFSEAGSLKRHLRIHTGEKPYVCPRCG
KDFTQSGLLQRHMRTHTGETPYHCLVCGMKFRHTISLKQHHLKNHKGETLGPVRMHQGPL
PCPHCGEKFSTKALLKGHLQKTHKSRVHCPQCDKTFSTKGSLLVHQRKHTGERPYLCPQC
GKSFSLTGSLKLHLRIHAGEKPYCCTYCDKSFTSKSHCNLHLRIHTGEKPYQCPDCGRRF
RDGNVLKNHRRTHTGEKPFQCRMCDKAFAQWSSLKKHQDTHRQTLPVSVPRLPNPYLPHN
QHVSYPYLSQTQW
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagcctcctgtcaacagagaaacatctacacacaacaacaacaggtttgcccag
gccctgaagagttctggccaatcagccgtggttatagggaagcgtgctgacatcaccctg
gatctatccaatcagcagtggcacagctcagacagagaggtcctgtcttcctttaaaaga
ggactagagtctcactcgttcagcgttgtccagttgtcttccttctctgaccatctgatg
tctatgatctctactgaccagcactaccacacgatgtctcagcgtctgagagagatgtgt
gtggtgtttgcagggccgttgcctagcgactacacagagagggatgtgaggaggctgttc
aggagctgtggaaacgtacaggctgtcaggctgctgaatgctactcagcgggtgcatgca
gaggtagagtttgagctgctggagggagctgtgctggctgtagagatgctcaacggaaca
ctgctacacacccgacacatcctcaaggtccagagacctgtaaaggagtccatgctggat
ctggacgtcttcctgagttgcctgcaggatgacctgctaagtgctaacgtcatctacgcc
gcagggctaaaggctaatgctaaaacagcacggcttgcagccaaagtcaatgggactggg
ctaaatgctaacgcagcaactgaagtcaatgagactgggctaaatgctaacgcagcagct
aaagtcaatggcactgggctaaatgctaacatagcagcaatcccagctaaggtcaataga
gctaggctacacgccaaagcgaaccattcagggctcttagagaaagtcaatggaacttta
ctaaatgctaaagctaagctagctgaagcgaatggacctgggctacatactaaagctaaa
tttgctaagatagcagagctctcagctgaagtcaatggcactctgctcaaagcgaaaact
atgctagcagagatagcagccgaagccaatgttggagcgaggctacatgccaagactgcc
ggactctgtgaagaggacctctgcaaggcctttggacagtacggaacggttcagggcgta
attctacctgcaaaccactctggaaaacagaaacgtaggagacatgctttcataaagtat
gatagtcctgacactgtggacgcggttctcagctcacctgtggaactctgggacaggaag
gtgagcactctcagagccctgactccgccccacctgcgctcctgggttactatgatgacg
acgactgggtctgacagagagacgccggacgaatcgtcacaggaaactggaagagaggaa
caagaagtggcgtgtgtgatgaggaagttggaccggcgcgtggggaagctgttcagatct
ctacctgacaacaccctcagcatcgtactgctgcctggtcacaacaggtactctatagtc
ctgccattgactgcattgtcgttgttgccacacgagcaggacaatatgaatccactcagt
tcagagaaggaaacgttgattgatgaaattgaacagagtttattcactttaaccgaggac
aatttatgttacctgtgtgaacgtcatggcaacgatggatcggaaattaaagggatgaat
catcgcttattacgccgtagaatcatggaggaaatgtgggacaatactgattcaatgaaa
tcggaggagcagggaatgtcttggttagtccaactgaaagatgacatcagaaggatgctg
gagattgctagtggtgcaccaatgagtcccagccagtccgatgatgatgatgctgtagac
tgtgatgaagaatgcgatggggacagcgattggttgcctagcaatggactgaaggtggag
cacttgagttccagccaatccgatgatgacgctgcagactgcgatgaagaatttgacatg
gaggacaattattggttggatagcaatgggctggggccagagtcagatccagagaggcac
actccagagcagagaaacaagctttccacgtcacactctgccctcccgaagtccccaggt
cgtgcctctcccagtagcgtattactgctgagtctgaagagggtgtctgtgcggctggtc
gactgcatgaaaacagcagggcagagtggccatataattcacaagacaacacagacagga
gagaatcctcacagctcgtctgctgaacaacgcaatgaaaccctctcaggagacagtcca
agctcccatatctgtgatcattgtgggaagaattttaccacagcaagaagtctaaaacta
cacctacagtacctgaagaaatacagagataacttgactggagagaaaccacacgtgtgt
tctacatgcggaaagggattcagtgaggctggcagtcttaagagacacctgagaactcat
actggggagaaaccgtacgtctgccatcattgtggaaaggcttggagtgattctggaaac
ttaaggagacacatgagaaaaactcacccaggagagaaggtcgttgtgatgagcgtcctt
acaggagagaaaccttaccattgctcctctgacgactgtgggatgagcttcggtacctca
cgcaaacgcagactacaccagagaaaacacacaagagagaagctttgcagcacgcctaat
gctaagcaacgtaaggaacccctctcaggagatggctcccatatctgtgatcattgtggg
aagagttttatcacagcacgaagtctaaaacgacacttacagtacctgaagagatacaga
gagaacttgactggagagaaaccacacgtgtgttctacatgcgcaaagggattcagtgag
gctggcagtcttaagagacacctgaaaactcatactggggagaaaccgtatgtttgccat
cattgtgggaagaactacaatgattctggaaacttacagagacacatcaggactcacaca
ggtgagaaaccttaccactgctcggaatgtggtaggaattttcgtgaaaaaataagcctt
atacatcaccgggaaattgttcacacagaacaccctcaccgctgtgctcactgtatgaag
agcttcgtaagtgcatttaaactggaatcacacatgcaaacccggcatccgccaaatgat
cctctgaaaaaaccacatgtgtgctctgaatgtggaaggggattcagtgaggccggcagt
cttaaaagacacctgagaatccatactggggagaaaccgtatgtctgtcctcgctgcggt
aaagattttactcaatctggactcttacagcgacacatgagaactcacacgggagagaca
ccttaccactgcttggtgtgtgggatgaagtttcgtcatacaatctcgctaaagcagcac
cacctgaagaaccacaagggggagacactgggtccagtccgtatgcaccaaggccctctt
ccatgcccccactgtggggagaagttctctaccaaggctcttctaaagggtcaccttcag
aagactcacaaaagcagagtccactgcccacagtgcgacaagaccttctccactaaaggt
agtttactagtccaccagaggaaacacactggagagaggccttacctttgccctcagtgt
ggaaagagtttctctctgacagggagtttaaaacttcatctccggattcatgctggtgag
aaaccttactgctgtacttactgtgacaagagcttcacaagtaagagccactgcaatcta
cacctgcgaatccacactggagagaagccgtaccaatgccctgactgcgggaggaggttt
cgtgatgggaatgtcttgaaaaaccaccggcggacccacacaggagagaaaccattccag
tgccgcatgtgtgataaagcctttgcccagtggagcagtctgaagaaacatcaggacaca
cacaggcaaactctgcctgtctctgtcccaagactccctaatccctacctaccacacaat
cagcatgtgtcttatccctacctatcacagactcaatggtaa
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