Salmo salar (Atlantic salmon): 106595600
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Entry
106595600 CDS
T04363
Name
(RefSeq) collagen alpha-2(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04518
Integrin signaling
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106595600
04518 Integrin signaling
106595600
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106595600
09142 Cell motility
04820 Cytoskeleton in muscle cells
106595600
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106595600
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106595600
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106595600
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106595600
Hyaluronan
Extracellular matrix or blood plasma proteins
106595600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Motif
Other DBs
NCBI-GeneID:
106595600
NCBI-ProteinID:
XP_014042440
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Position
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AA seq
532 aa
AA seq
DB search
GSQGDAGDFGPRGNTGAAGAKGDGGSDGYNYPGPRGKQGGRGDPGLPGLQGTRGYNGEKG
AQGTTGTKGLAGEPGQEGVPGDRGVRGSPGPLGVPGIRGASGLSECEIMGFVRETCGCCD
CEKVCPPLDLVFVIDSSESIGKTNFSLAKNFVISVANRFGKMAKNISDVSGSRLGVVQYS
HQGAVQAIRMDDRGITSVTSFNTKVKAMEWIAGGTWTPSALKYTYDHLIVPGRRGRTKVV
AIVITDGRYDPKDLDNLGALCNGVDVYAIAIGDMFDSGAERQNLERIACNMGDRVKTLSV
YAELTAEEFLEEIEQILCPEPEMICPDLKCASDLSLAPLIQRPVDILFFIDGSERTGGRN
FISILHFIERLSQSIPLSKEVSSGARFAVLQFGGEQDPEVLLDFSNNRRKISSLVSNAVY
RDSSSTLGSAILYATENLVSNPGGRFRGVRPDAELAFVFITDGVTSDKNFAEGFGAMRRA
NAVGVAITVGSDIDRERLLQLTLRDKALIFNLKSFNDLALPGVVKHMAHCLG
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
ggctctcagggggatgcaggggactttggcccccgaggaaacactggagcagcaggagct
aagggagatggaggaagtgatggatacaactacccaggtcccagagggaaacagggaggg
agaggagaccctggtttacctggactgcagggcaccagaggttataatggagagaaagga
gcccagggaactacaggaacaaaaggactggcaggggagccagggcaagagggtgttcct
ggggacagaggggtgagggggtcacctggaccactgggagtacctggtattcgtggggct
tctggtctatcggagtgtgaaatcatgggatttgttagagaaacatgcggctgctgtgat
tgtgaaaaggtttgccctcccctggacctggtgtttgtgattgacagctctgaaagtatt
ggaaaaaccaacttcagcctggctaaaaactttgtcatcagtgtagcaaacaggtttggg
aagatggccaaaaacatatctgacgtctcagggtctcgtctgggtgtggttcagtacagt
caccaaggggcggttcaggccatcaggatggacgataggggcatcacctctgtgacctcc
ttcaacacaaaggtcaaagccatggagtggatcgctggaggcacctggactccgtctgcc
ctgaagtacacatacgaccatctgatagtaccaggtcgcagggggaggaccaaggtggtg
gccatagttatcacagacggtcgctatgatcctaaagacctggataatcttggagccctg
tgtaacggggtggacgtgtatgccatcgccatcggtgatatgtttgactctggggcagag
aggcagaatctggagaggattgcctgtaatatgggtgaccgggtgaagaccctgagtgtc
tacgctgaacttactgctgaggaattcttagaggaaatagaacaaatcctctgcccagaa
ccagagatgatctgtccagacctgaagtgtgcctcagatttgagtttggctccactgatc
cagcgccccgtagacatcctcttcttcattgatggttctgagagaacagggggcagaaac
ttcatcagcatcctgcacttcatcgagagactctcccaatcgatccctctctccaaggag
gtctcttcaggagctcgcttcgccgtgctgcagtttggaggggagcaggacccagaggtt
cttctggacttctcgaacaaccgcagaaagatcagctccctggtctctaatgcagtctac
cgcgactcatcctccactctgggcagcgctattctctacgcaactgagaacctcgtcagt
aaccctggaggtcggttcagaggggtacgtccggacgcagagctcgcttttgtgttcatt
acagacggagtgacctcagacaagaactttgctgagggttttggagccatgagaagggcc
aacgcagtgggtgttgctatcacagtggggtcagatattgacagggagcggttgctgcaa
ctcactctaagggacaaagctcttatctttaacctgaagagtttcaatgacttggccctc
cctggggttgttaaacacatggctcattgcctaggttaa
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