Salmo salar (Atlantic salmon): 106596129
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Entry
106596129 CDS
T04363
Name
(RefSeq) collagen alpha-2(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106596129
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106596129
09142 Cell motility
04820 Cytoskeleton in muscle cells
106596129
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106596129
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106596129
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106596129
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106596129
Hyaluronan
Extracellular matrix or blood plasma proteins
106596129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
106596129
NCBI-ProteinID:
XP_014042925
UniProt:
A0A1S3QS93
LinkDB
All DBs
Position
ssa03:667387..702254
Genome browser
AA seq
690 aa
AA seq
DB search
DLFSTVYKFQKGSRSLISVVLQGIKGDNGNAGFKGERGRQGDPGIEGPIGQPGVKGEIGL
EGEKGEIGAEGMKGVAGLAGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGHSGDAGDGGL
PGTGGEKGDPGRPGNTGPLGPVGDAGPKGERGSPGSSGFPGAKGTPGAIGGPGDKGELGR
RGDFGSKGNQGPDGEKGDKPNTPSDPVCIQGERGEKGGPGPRGGRGDCGPKGGPGGKGAS
GEEGEPGPQGEPGFRGPRGVGGRDGDPGPEGDPGLTECDVMNYIRETCGCCDCEKRCGAL
DIVFVIDSSESVGLANFTLEKNFVINTINRLGSMAKDPNSETGTRVGVVQYSHSGTFQAI
RLNDSKIDSLSAFKDAVKRLEWIAGGTWTPSALKYAYDHLIKDSRRAKANVTVVVITDGR
FDPRDDDSLLTYLCSDPSVDVSAIGIGDMFDQIEENESLKSIAAEEFIDKIETVLCPDPV
IVCPDLPCKTEPAVASCVQRPVDLVFMLDGSERMGVENHRRAKEFIENVARRLTLANGQS
DDRNARVALLQYGGQSEQRVEFSLTHNLTVIADSLAGMSYMDSASSLGSAIIHAVNNLVM
SQGSRLARRNAELSFVFITDGITAGDSLEEGVSAMRRAEGIPTVIAMGTDTDQEVLRKVA
LGDTSAIFRGEDYATLGKPTFFERFIRWVC
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
gatctgttttcgacagtttacaagttccagaaaggtagcaggtcactaatatctgttgtg
ttacaggggatcaaaggagacaatggaaacgctggttttaaaggagagagaggaagacag
ggcgaccccggcatcgagggtcccattggtcaaccaggagtcaagggtgaaatcggtctg
gagggggaaaagggggagatcggagctgaggggatgaagggtgtggccggcctcgcagga
cgcaacgggacagacggacagaagggaaagatcggacgcatcggcgctcccggctgcaaa
ggagatccaggagacaggggtcctgatggtcactcaggagacgcgggcgacggtggactt
cctggaacaggtggagagaagggagatcccggtcgaccgggaaacacaggccccctcgga
ccggtgggagacgctggacctaagggtgagagagggagtcccggctcgtctggcttccct
ggagccaaagggacaccaggagctattggtggcccaggagacaagggagaactggggaga
agaggagactttgggtcgaaaggaaatcagggaccagatggagaaaaaggagacaagcct
aacacaccgtccgaccctgtgtgcattcagggtgaacgtggggagaagggcggtccagga
cccaggggaggcagaggagactgtggccccaagggaggaccaggtggaaagggagcctct
ggagaggagggagaacctgggcctcagggagaacctggattcagaggaccgagaggagtg
ggtggacgagacggagatccaggtcccgagggagaccccggcctcactgaatgtgatgtc
atgaactacatcagagagacctgtggctgctgcgactgtgagaagcggtgcggggccctg
gacatcgtgtttgtgattgacagctcagagtccgttggtctcgccaactttactctggag
aagaattttgtcatcaacaccattaacagactgggatctatggccaaggaccccaactca
gagacaggtaccagagtgggtgtggtacagtacagtcacagtggaaccttccaggccatc
aggctcaatgactccaagattgactccctgtctgccttcaaggatgcagtgaagcgtctg
gagtggatagccggtgggacgtggaccccgtcagcgctgaaatacgcctacgaccacctg
atcaaggacagccgccgagctaaagccaacgtcaccgtggtggtcatcacggacggacgg
ttcgaccccagggacgacgactcactgctcacatacctctgcagcgaccccagtgtggat
gtgagcgctataggtataggggacatgtttgaccagatagaggagaatgagagcctgaag
agtatagccgcagaggagttcatcgacaagatagagaccgtgctctgcccagaccctgtc
atcgtgtgtcctgaccttccctgtaaaactgagccagcggtggccagctgcgtccagcgc
cctgtggaccttgtgttcatgctggacgggtcagagaggatgggagtggagaaccaccgc
cgcgccaaggagttcattgagaacgtggcgcgccgcctcactctggccaacggccaatca
gacgacaggaacgcccgcgtggccctgctgcagtacggcggccagtcagaacagagggtg
gagttttcgctcacgcacaatctgacggtgatcgctgattcgctggcagggatgagctac
atggactccgcctcctctctgggcagcgccatcattcacgctgtcaacaacctggtgatg
tcacagggcagccgcctggcacgtcgtaacgctgaactgtccttcgtctttatcaccgac
ggcatcaccgcgggcgacagcctggaggagggtgtctcagccatgcggcgggccgagggc
attcccacggtgatcgccatggggaccgacacggaccaggaagtgctgaggaaggttgcc
ctgggagacacgtcggccatctttagaggggaggactacgccacgctggggaaacccacc
ttcttcgaacgcttcatccgctgggtctgctaa
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