Salmo salar (Atlantic salmon): 106598235
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Entry
106598235 CDS
T04363
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04382
Cornified envelope formation
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04518
Integrin signaling
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106598235
04518 Integrin signaling
106598235
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106598235
09142 Cell motility
04820 Cytoskeleton in muscle cells
106598235
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106598235
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106598235
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106598235
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106598235
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106598235
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106598235
NCBI-ProteinID:
XP_014044765
UniProt:
A0A1S3QXE8
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All DBs
Position
ssa03:complement(8408836..8493784)
Genome browser
AA seq
1671 aa
AA seq
DB search
MSPFACWVTFCSLPIWWIVLLHISEQRVNAGETLGSCDGRDCSVCSCLPAKGARGAPGKL
GKQGPQGPDGIRGSAGPHGEKGRRGVEGPPGLDGKKGERGQTGHPGFPGIDGVNGHVGAG
GNPGLPGLDGCNGTRGQTGIPGVHGTNGFPGPRGYLGPKGTKGEPVYDVSVPGLPGDPGP
PGRSGSPGHVGPKGHTGPAGPNGNNGPDGPHGARGEPGDNGRSLPGIKGDEGDQGQPGPP
GPEEIVEPPDFFYPKGGKGDKGVPGPCGPRGITGEKSYEGLKGETGIRGFPGPRGYIGST
GLPGTPGPQGYPGDQGFPGLIGRTGPTGFPGDKGFRGPSRQIYHNYTVAGYPGDPGPQGP
RGAPGDIGEMGINGPPGPPGVLISTGQPGQLGYPGLPGPKGLKGEPGRYYTIEPIPGQPG
ERGRPGAKGFRGPPGRPGYGGIYCVPGEPGIRGDDGDTGYPGVTGYKGEKGYNGECECTY
ENGHRGIPGPPGPRGPLGYDGLPGHSGEKGDHGYNGDPGSQGSHGNPGRPGYNGVKGQKG
ESYVINYKGAKGDPGFNGPNGPFGATGRPGSDGFPGPVGDPGPPGDGYGGSVGDKGYPGP
RGPEGPPGRPGPPGPGAPGRHGHQGPPGDAGLPGLPGQTGQPGPRGEVLPCGPYNPGLPG
LKGLLGPPGNPGPPGPLGFPGPTGSLGPQGMRGDDGTDGGTGPPGQQGCVGDDGDPGQPG
INLDGPPGLPGPPGSPGWPGPPGDTFNTGPGPIGPPGLPGLLGPKGDPGLPGIPGPPGGL
GPCGGVGYKGSKGDTGDPGPSGPPGPIECREKGAVGPPGASGPPGVRGPSGFRGDKGRKG
AMGPAGRGVKGPAGIPGLPGPPGPVGAKGFSGSPGDPGFPGVTGTKGPRGYPGRNGSAVP
GTPGRPGNPGSRGRQGERGFTGRDGQDGDQGYKGAKGHRGPPGSPGPVGVITIKGQKGSE
GPPGEDGFTGPRGSKGPSGSPGKPGKNGQDGSPGYEKGLPGQPGRPGPPGHPGPRGPKGL
SGIVGFPGPVGDKGDPGHTGPPGNPGLPGMTGLPGDPGDSIGQPGLPGPPGPPGESRTLA
SKGDPGDPGAPGPRGSPGQPGVHGARGPLGGPGFPGPSGPPGRPGSPGPPGGILGGQGPK
GNPGQPGPPGFPGPPGLHGLNGLQGQKGEKGARGPDVLGPRGPSGFPGVKGHTGSQGPPG
TSYPGPKGLRGPPGYQGPKGLTGEPGGSGGECTECHRGPNGEPGYEGIHGPPGPPGEPGP
AGTAEPSPGDPGPQGPPGPNGHKGQRGPPGPLGPTDYSGSQGPKGARGPEGHMGPNGPRG
RPGAYGLLGPKGDKGRPGDAGPKGLPGQVLDGVVTTQEPHRGIHGPSGPLGPNGPPGTAG
PRGNPGPHGPKGPAGSRGPPGRNGPPGPPGPLGDPGDHGQQGFVGHQGPPGSQGDRGYPG
STGSVSSGFLLVIHSQSVEVPVCPEGSSPLWTGYSLFYLEGQERTHTQDLGQAGSCLRIF
STMPFSYCNTGTCDYASRNDKSYWLSTTAAVPMMPVSGHDIRTHISRCAVCETPSPAVAV
HSQDYIAPTCPPGWRSLWAGYSFLMHSGAGDEGGGQSLTSSGSCLRDFRAQPFVECQGPR
GTCHYFANVYSFWLTHVSLDEQFGPGPVPSVLKAADQQRQQASRCHVCTKG
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccttcgcttgctgggtgaccttctgttctctgcctatctggtggatcgtcctg
ctgcacatctctgaacagagggtcaatgctggagagacgctgggctcgtgtgatggcaga
gactgctcagtgtgcagctgtctccccgccaagggagcccggggggccccagggaagctg
gggaagcaggggccacagggcccagatggcatcaggggctccgcagggcctcacggagag
aaggggaggaggggcgtcgagggaccacctgggctggacggaaaaaaaggggaacggggt
cagactggtcacccaggatttcctggtatcgatggtgtcaatggtcacgttggtgctggg
gggaatcctggtctgccggggctagacggctgtaacgggaccaggggacagacggggatc
cccggtgttcatggcacgaacggattccccggacccaggggatatctcggtcccaaagga
acaaaaggggagcctgtctacgatgtatctgtacctggccttcctggtgaccctgggcct
cctggaagatctggatcacctggccatgtgggacccaagggtcacacagggcctgctgga
cctaatggaaataatggtccagacggtccacacggggctagaggagaaccaggtgacaat
ggcagatcactgccgggcattaaaggtgatgagggggaccagggtcaaccagggcctccg
gggcctgaggagatcgtcgagcctccagactttttctaccccaaaggaggcaagggggat
aaaggggttcctggaccatgtggacccagaggcataactggagaaaaatcctatgaagga
ctaaagggagaaactggaatccgtggctttcctggccctcggggttacataggatctacc
ggcctgcctggaacgcctggaccacagggctatcctggagaccaagggtttcctggtctg
atcggcaggacaggaccaacgggcttcccaggagacaaaggcttcagaggaccgtcgcgc
caaatataccacaattacactgtagcaggttaccctggtgatcctggcccccaaggtcca
aggggggcaccaggagacattggagagatgggcattaatggacctccgggaccaccaggg
gtattaatctccacaggtcaaccagggcagctaggttaccccggtctccctggtcctaag
ggtttaaagggggagccaggcagatactacactatagagccaataccaggacaaccaggg
gaaagagggcgtcccggagccaagggcttcagaggccccccaggccgtccaggatatgga
ggcatttattgtgttcctggtgagccgggtatacgaggagacgatggcgataccggatat
ccaggagtaacgggatacaaaggagaaaaaggctacaacggtgagtgtgagtgtacgtac
gagaatggtcacagagggatcccaggtcctccgggcccccgcggacccctagggtatgac
gggctgccagggcacagcggagagaaaggtgaccatggatataacggggaccctggctca
caaggatcccacggaaacccaggcaggcctggttacaatggagtgaagggacaaaaggga
gagtcctatgtgatcaactataaaggtgcgaagggtgaccctggcttcaatggccccaac
ggaccgtttggggccaccggtcggccaggatccgatggcttccctggccctgtgggagac
cccggacccccgggtgacggttacgggggctcggtaggtgacaaaggctacccagggccc
cgtggtcctgaaggccccccaggcagaccgggccccccaggccctggtgctccaggccgt
catggccaccaagggcccccaggggacgcgggcctcccaggtctccctggacaaactgga
caacctggacctcgaggcgaggttctgccctgtggcccttacaaccctggcctacctggc
ttaaagggtctacttgggcccccagggaatcctgggccaccaggaccacttggtttccca
ggtcccacaggttcccttggacctcaaggcatgagaggagatgacgggacagatggagga
actggaccaccaggacaacaaggatgtgttggagatgatggtgaccctggtcaacctgga
atcaacctggacggaccaccaggactccctggaccaccaggctctccaggctggccggga
cctccaggagacaccttcaacaccggacctggtcccattggtccacctggactacctggg
ttactgggacccaagggagatcctggtttgccaggcatccctgggcctccagggggacta
ggcccgtgcggaggtgtgggttacaaggggtcaaaaggagacactggggacccaggaccg
agcggtcccccagggccaatagaatgtagagagaaaggagctgttggcccaccgggagcc
tcaggaccaccaggagtcaggggcccatcgggtttccgtggtgataaaggacgtaagggt
gcgatgggtcctgctggacgtggagtgaagggaccagcagggatccccgggcttccaggt
cccccgggccccgttggtgccaagggtttcagtgggtcaccaggtgacccgggcttccct
ggtgtaacagggaccaaagggcccaggggatatcctggtagaaatggatcggctgttcct
ggtacaccgggtcggcctggaaacccaggatcccgcgggaggcaaggggagaggggtttt
acaggacgtgacggtcaggatggagaccaggggtacaaaggagccaaaggtcatagaggt
cctcccggaagtcctggaccagtaggagtcataaccattaaaggacagaagggctctgaa
ggaccaccaggagaggacggcttcactggacccagaggttccaagggtccaagtgggtca
ccaggtaaaccagggaagaatggacaggatggttcccctggatatgagaaagggctccca
ggacaacctggcagacctggtccccccggacaccccggacctcgaggacctaaaggcttg
agtggtatagtgggtttccctggaccagtcggtgataagggggaccctgggcacacggga
cctcctgggaacccaggccttccaggaatgacaggcttaccgggtgacccaggagactcc
ataggacaaccaggactacctggaccaccgggtcctccaggagaaagcagaaccttagct
tcaaagggggacccaggagatccaggggccccaggacccagaggatcaccaggacagcct
ggtgtccatggagcccgaggcccactgggtggcccaggttttcctggtccctcaggtccg
ccgggtcgcccaggctccccagggcctcccggaggaattctcggaggtcaaggtcccaag
ggcaatcctggacagcccggtcctccaggttttccgggacccccaggtctgcatggtctg
aacgggctacaaggccaaaaaggagagaagggagcaagaggaccagatgtgttgggccca
cgagggccatctgggttccccggagtcaaaggccacacaggctcccagggacccccggga
acttcttaccccggacctaaaggcctaaggggccctccaggctaccaaggaccaaaagga
ctcactggtgagcccggtggttcaggtggagagtgcacagaatgtcacagaggacccaac
ggagagccaggatacgaaggcattcatggacctccaggaccacccggtgaaccgggtcct
gctggtactgcagagccatctccaggagacccaggcccccaagggccaccagggcccaat
ggccataaaggacagagaggccccccaggacccctagggccaacagactactcaggatca
caaggacccaaaggtgccagaggccctgagggtcacatgggccccaacggaccaagaggt
cgtccaggtgcctatggcctcctggggcccaaaggtgacaaaggcagacctggggatgca
ggtcctaaaggcctgcccggtcaggttttggatggtgtcgttaccactcaggaaccccac
cgtgggatccatggcccctcaggtccattaggtccaaatgggcccccgggaacggctggg
ccccgtgggaaccctgggcctcacggtcctaagggcccggctgggtcacgagggccccca
gggagaaacggacctccaggtccacctggacctttaggagacccaggcgatcatggacag
caaggttttgtgggacatcagggtcctccgggttctcagggtgaccgtggctaccctggt
tccactggctctgtgagttcaggcttcctgctggtgatccacagccagtcagtggaggtc
cctgtgtgtcccgagggcagcagccccctgtggaccggctacagcctgttctacctagag
gggcaggagaggacacacacacaggacctgggccaggccggctcatgtctgcgtatcttc
agcaccatgcccttctcctactgcaacacaggtacctgtgactacgccagccgcaacgac
aagtcctactggctttccaccaccgctgccgtgcccatgatgcccgtgtcgggccacgac
atccgcacccatatcagccgctgtgccgtgtgtgagacaccctcgcccgctgtggcagtg
cacagccaggattatatcgcccccacctgcccccctgggtggaggagtctgtgggctggc
tactccttcctcatgcactctggagcgggcgacgagggtggcggccaatctctgacctca
tccggcagctgcctgcgagacttccgtgcccagccctttgtggagtgccagggcccgcgg
ggcacatgccactacttcgccaatgtctacagcttctggctgacccatgtttccctggac
gagcagtttggccccggccccgtccctagcgtgttgaaggccgccgatcaacagcgccag
caggccagccgctgccacgtgtgcaccaagggctga
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integrated database retrieval system
