Salmo salar (Atlantic salmon): 106598248
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Entry
106598248 CDS
T04363
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106598248
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106598248
09142 Cell motility
04820 Cytoskeleton in muscle cells
106598248
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106598248
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106598248
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106598248
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106598248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106598248
NCBI-ProteinID:
XP_014044776
UniProt:
A0A1S3QY04
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All DBs
Position
ssa03:8512259..8564366
Genome browser
AA seq
1531 aa
AA seq
DB search
MGQPGSPGCNGTEGERGPNGPAGPCGGDDGLRGLPGAPGPKGESQMLIGIGQPGRPGPRG
RDGDQGVRGVTGPTGQQGDVGPRGAIGLLGLPGAPGLKGQEGRSSSIPGSCGPKGHQGPP
GVPGPKGIKLYAHAPSDLKGETGDLGEKGCKGSPGYAGQVNFKEKGDQGGIGTEGRPGKD
GHQGPAGYEGRKGNTGLAGPDGIPGPWGQKGDQGQDGDPGEVTMIGCAVIGPKGQPGFTG
PLGPTGVTGPPGVTGFQGPPGSPGPNYEGDPDNRGVKGHSGPKGDKGEPGPIIQGEPGRE
GSQGTSGDLGPPGPPGDSDNLKGLIGPPGAKGAKGEQGYSGQYGLKGEKGEVCSLCTGKG
SGEPGPPGSPGQPGLPGFSAGPGPKGEPGLKGPSGSPGQQGLHGPSGVPGPPGPKGNSGS
RNHQGIKGEKGAPGPAGRSGLDGLYGAPGFRGRKGQQGPKGDPYYGPLGLKGDIGVPGPP
GPQGYPGPDGSPGPVGIGPLGPSGPKGNSGVPGLPGTPGYRGQKGEPCSSVSDQGVPGLP
GKVGLPGTRGPPGPRGGAGNPGEKGDRGVFSTLGRRGPTGQKGDKGQPGRPSTSGSGNPG
RPGVMGFPGAPGPKGDAGFEILGPAGLKGFPGGVGAQGPPGDPGVLGRPGSPGPPGLNGS
SGPKGSKGVDGSQGPPGYAVTCCTEAPTGPPGLSGRPGPPGINGEMGSRGDPGAPGFGSS
GPAGDPGPPGASGPGVQGLTGQMGGRGRDGLPGASGPRGDPGLEGRSGPGPDGPPGPEGP
PGPKGSVGPDGEKGHRGVPGSVGDDGPPGPCGPSSNTDIHGPPGDPGKRGLPGFHGAKGH
PGYPGPKGIDGRDGDPGNGSRGCPGEPGADGLCSGGPGPSGLRGNMGLMGLPGPHGIKGG
PGSNGDPGLDGMPGPCGPKGTKGESSCAKPGLPGSPGQKGEPALYNKHDSKGMKGSPGYA
GPPGSQGPSGAKGDPGHHGHHGARGPAGQPGTDGPPGLPVSHGAPGQPGLPGPPGPYGPK
GNQGHDGIPGPAGQKGETLIVRSTPGPRGKNGLPGPKGDVGFPGPTAPGPPGCPGDQGHR
GNEGPQGSRGRPGFGGVCVNGLKGDAGPQGSPGSPGQRGPQGQPGSGGYECKGDKGDLGA
PGGRGMDGPTGDLGPPGLRGPGAIPGPPGPIGSPGHSGTPGVPGEMGDPSYNPGPKGTNG
SKGRPGPPGGPGLDVPMRPKKGDPGPPGYTGNQGPPGPSGPPGQPGLTGPPGPEGQQGHS
PPGLPGFPGRKGDKGSPGLTGPLGYQGFPGQKGPLGPRGCSTAGLADSFMLARHSQTIRV
PDCPQGTTLIYSGYSLLFINGNKRAHGQDLGSMGSCLPRFSTMPFLFCDTDDTCRYAARN
DYSYWLSTEKPMPRSMDLIRGDEISSYISRCSVCEGSSNAMAIHSQTAQLPDCPGDWESL
WTGYSFVMQTGAGAEGSGQPLGSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSFWLALLD
PIHMFSKPVPQTVKGRLLENVISRCRVCRKP
NT seq
4596 nt
NT seq
+upstream
nt +downstream
nt
atgggccagccaggttccccaggatgcaatgggacagagggtgagagaggtcctaatggt
ccagctggtccctgtggtggtgatgatggattaagaggtttacctggagcacctggacca
aagggtgaatcccaaatgttaattgggattggacagccagggagacctggaccccgagga
agggacggtgaccagggtgtccgcggtgtaacaggaccgacaggacaacaaggggacgtt
ggaccccgtggtgccattggattgctaggtctacccggggccccagggttaaagggtcaa
gagggacgcagctccagtatccctggctcttgtggtccaaagggacaccaagggccccct
ggagtcccgggacccaaagggatcaagctatatgcccatgctccctccgatttgaagggg
gagacaggggatctgggtgagaagggctgtaagggttcacctggttatgctggccaggtc
aactttaaggaaaaaggggaccaggggggcattggcactgagggaagaccagggaaggat
gggcatcaagggcctgctggatatgaggggagaaaggggaatactggtttagcaggacct
gatggaatacctggaccgtggggacagaagggcgaccagggtcaagacggagaccctggg
gaggtgaccatgattggctgtgccgtaattggccccaaaggacaaccaggatttactggc
cccctggggcccactggggttactggtccccccggtgtcactggtttccaggggcctcct
gggtctccaggtcctaactacgaaggagatcccgacaatcggggagtgaagggccacagt
gggcctaaaggggataaaggagaaccaggacccatcatccagggagagccaggcagggaa
ggctcacaaggaacatctggagaccttggacccccgggaccacctggagactcagataat
ctgaagggccttataggacctccgggggcaaagggagccaagggagaacaagggtacagt
ggccaatatggattgaaaggtgagaaaggagaggtctgtagtttgtgtacgggaaaaggg
tcgggagagccgggacccccaggttcccctggtcagcctggactcccaggctttagtgca
ggaccaggacccaaaggagagccaggactcaaaggaccctcgggatcacctggacaacag
ggtctccatggcccttcaggtgttccaggacccccagggccaaaaggaaattcaggttcc
cgcaaccaccaggggataaagggagagaaaggagccccaggaccagctggtagatcaggg
ctggacggcctatacggggcccctggcttccgtggacgcaagggccaacaaggccctaag
ggtgatccatactatgggccactgggtctgaagggagatattggtgtcccaggccctccc
gggccacagggatacccaggaccagacggttcaccaggtccagtaggcataggaccgctt
ggcccctcaggacctaaaggcaatagtggggtaccaggtctacctggtacacctggttac
cgaggtcagaagggtgagccctgcagcagtgtgtctgaccagggagtcccaggcctaccg
ggaaaggtggggctgccgggcacacggggccccccaggtcctcgtggtggtgctggtaac
ccgggggagaaaggggacaggggtgtattctccaccctgggaagacgaggacccactgga
cagaaaggtgacaaagggcagccgggacgcccaagtacctctggaagtggcaatcctgga
cgacccggcgtaatgggattccctggggctccagggccaaagggtgatgctgggtttgag
atcctaggtccagccggccttaaaggtttcccaggtggtgttggggcccagggccctcct
ggagatccaggagtactgggccgaccagggagtccgggaccacccggcctcaatgggtcc
tcaggccccaaaggaagtaaaggtgtagatggttcccaaggacctcctggttacgcagtt
acttgctgtactgaagccccaaccggaccaccagggctgtcaggcagacctggaccccca
ggtattaatggagagatgggttcgcgcggggaccctggcgccccgggctttggaagttca
ggtccggctggtgaccctgggccccctggggcctccggacccggagtgcagggcctgact
ggacagatgggaggcagagggagagacgggttaccaggtgcatcaggtcctagaggtgac
cctgggctggaaggaagatctggaccgggccctgacggcccacctggacctgaaggacca
cccggtcccaaagggtcggttggccctgatggggagaaaggtcacaggggtgtaccaggc
tctgtgggggacgacgggcccccaggcccttgtggaccatcatccaatacagacatacat
gggcccccaggggaccctgggaaacgtggtctgcctggtttccatggtgctaaaggacac
cctggatatcctggacccaaaggcattgatgggagggatggcgacccaggaaatgggtcg
agaggctgtccaggtgaacctggggctgatggactgtgctcaggaggaccaggcccatct
ggactcagaggaaatatggggctcatgggtctaccaggtccccatggaataaagggaggc
ccgggttccaatggagacccaggactagacggtatgcccggtccatgtgggccaaaagga
actaaaggagagtccagttgtgcaaaaccaggcctcccaggatcacctggacagaagggc
gagccagccttgtataacaaacatgactccaaaggaatgaaaggctctcctggttacgca
ggtcctccaggctcccaaggaccctctggagccaaaggagacccaggacatcatggacat
catggagcccgaggtcctgccggccaaccaggtactgatggccccccaggactccctgtg
tcacacggagctccaggacaaccagggttacctggccctcctggtccctatggtcctaaa
ggtaaccagggtcacgatggcattcctggacctgctggtcagaagggagagacactgatt
gtgagatcaactcctggcccacgtggaaagaatggactgccaggtccaaagggagatgtg
ggtttccctggccccactgctccggggcccccagggtgtccaggagatcagggccaccga
ggcaacgaaggaccccagggttctcgcgggaggccagggtttggtggtgtttgtgtcaac
gggctgaaaggagatgctggtccccagggcagccctggaagccctggacagcgaggtccg
cagggacagccaggttctggaggctatgaatgtaaaggggacaagggagacctgggcgct
ccagggggcagaggcatggacgggcccacaggggacctcggacctccagggctacgggga
ccaggagccatccctggacctccaggaccaatcgggtccccaggtcactctggaacccca
ggagtccccggtgaaatgggtgatcctagttataaccccggcccgaaaggtacaaatgga
tccaaaggccggccaggaccaccaggtggtccgggacttgacgtgccaatgagacccaaa
aaaggggatccgggcccacccggttacaccggcaaccagggacctccaggtcccagtggg
ccgccaggacaaccaggattaacagggcccccaggtcctgagggtcaacagggacacagc
cctccaggcctgcctggcttccccggacgcaagggagacaaaggatcgccaggactgaca
gggccactgggctaccaggggtttccaggtcagaagggtcctcttggcccacggggctgc
agcacggcaggcctggctgacagtttcatgctggcccgacacagccagaccatcagagtg
cctgactgcccccaaggcaccaccctcatctactctggatactctctgctcttcatcaat
ggcaacaaaagggctcacggacaagacctgggctccatgggcagctgcctgcctcgtttc
tccaccatgcccttcctgttctgtgacacggacgacacttgtcgctacgccgcacgcaac
gactactcctattggctgtccacagagaagcccatgccacgcagcatggacctgatcaga
ggagacgagatcagcagctacatcagcaggtgttcagtgtgtgagggcagctccaatgcc
atggccatccacagccagactgcccagctcccagactgtcctggtgactgggaatccctg
tggactggatactcctttgtcatgcaaacgggtgcgggtgctgaggggtcgggccagccc
ctgggctccccaggctcgtgtctagaacacttccgccaggtccccttcatcgagtgtcac
ggccgaggaacctgtaactacttccctgactcctacagcttctggctggccttgctcgac
cccatccacatgttcagtaagcctgtgccccagacggtgaagggacgtcttctagagaat
gtcatcagtcgctgccgcgtatgcaggaaaccatga
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