Salmo salar (Atlantic salmon): 106599404
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Entry
106599404 CDS
T04363
Symbol
tnr
Name
(RefSeq) tenascin R
KO
K06252
tenascin
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106599404 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106599404 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106599404 (tnr)
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106599404 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
FN3_Tor_3rd
Fn3_Dep-1_2nd
Interfer-bind
EGF_Tenascin
EGF_2
DUF4998
Fn3_Dep-1_1st
Fn3_ELFN
Motif
Other DBs
NCBI-GeneID:
106599404
NCBI-ProteinID:
XP_014046086
UniProt:
A0A1S3R146
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Position
ssa03:22130155..22296119
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AA seq
1369 aa
AA seq
DB search
MGPARGWLLGLVLLLLGTQAALSPSGEEGKLVRTIRVRRQAPSDGPTSQSNNQTIKEQPM
VFNHVYNINVPLESLCSVDLDSAVPPPSQATRGAVSSGGGEGATEFREQTVDADSQVTFT
HRINIPKQACACSTANIVQQLAIRIEMLEREVLLLRAQCSSGSCGCGESSAMGHLDFIPQ
CSGHGSFKMDLCGCVCEDGWTGKNCSEPRCPDDCSGQGVCMEGECVCDRDFGGDNCSEPR
CPADCSGRGLCMDGECICEENFTGEDCTLGRCLNDCSDQGLCTNGTCQCRPGYVGEDCSL
AYCANNCSQKGICKEGFCVCQDGFAGEDCSAVAPALNLRMRGVTEHTIDLEWEGSVLMTD
YLVTYVATSPGGVQLEIRIPGNTTTCSIPDLEPGIEYNINVYAVLNNVISAPTNTQVSTY
LSNPDGLLFKSITETSVEVQWQPFYYSFDGWEISFIPKDNDGGMTAQLPSTITSFHQTGL
RPGEEYTVNLVALRDQGRSQPVSATVTTLIDGPTQMIVRDVSDSVAFVEWTNPKAKMDQI
VLRYGLVGEDMPKTTFRLQPTLSQYSLQMLRPGSRYEVSISGVRKGNESGTISTEFSTVL
MFLSEIDAPKNLRVLSKFSTALELEWDNSEAEVEGYQVVYSTLAGDQYEKVIVPLNDGPT
SKTTLTNLLPGTEYGIGISAMLGTNQSSPATMNARTGLDVPMDLTVTASTDNTITLLWGV
VQGPIDQYMVTYTSSSGLTTEVTVPKDVTTTTLNDLEPGTEYTITVTAQRGRQQSTAATI
DGFTGFRPIIALYLSDVTWDSVTVAWSAPSPPADLYILTYSSEDGTDTSKVTLDGSKTRS
SIKGLLPSTEYTVSLITIQGEVKSEAVTATLTTGMDPPKEMTVSYATEDSVIISWLRPFA
PFDYYKMSYQSERGTVDSVVIDNDVTNYTLSSLHPATEYEINLNVVRGSQESKSITTSVF
TAMDMPMELTALNITPQGALLRWNPPLSSVDNYVFTLTCNQVTANTFLVEGVKQEHQLSK
LKPSTTYSVALYATKGPLTSGTVIANFETPMDAPLNLTASEVNHRSALISWQPPIADIDN
YMLTYKSVDGNRKELILDAEDTWIRLEGLAETTEYTVRLQAARGLETSGIVSTAFTTGNR
LFATPQNCAQHLLNGESLNGVYTIYINRDANQGVQVYCDMTTDEGGWIVFQRRQNGLTDF
SRKWSDYRVGFGNLEDEFWLGLDNIQKLSAQGRYELRIDMKDGQESVYASYDKFAIGDAR
NLYKLRIGEYNGTAGDSLSYHQGRPFSTKDRDNDIAVTNCALSYKGAWWYKNCHRANLNG
KYGESRHSQGINWYHWKGHEFSVPFVEMKMRPFNYRSISGKRRRSTPPE
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgggccctgcacgaggctggctgctgggcctggttctactccttctggggacccaggct
gctctatccccgtccggtgaggaggggaagctggtccggaccatcagggtcagaagacag
gcaccttcagatggccccaccagccaatctaacaaccagaccatcaaggagcagccaatg
gtcttcaaccatgtgtacaacatcaacgtgcccctagagtctctgtgctccgtggatctg
gactcagcagtgcctccacctagccaggccaccagaggggctgtgtccagtgggggtggg
gagggcgccacggagttcagagagcagacagtggacgcagacagccaggtcaccttcacc
caccgcatcaacatccccaaacaggcctgcgcctgttctacagccaacatcgtgcagcag
ctggccatccgcatcgagatgctggagagagaggtgttgctgctgagagcccagtgcagc
tctggcagctgtggctgtggggagagttcagccatgggtcacctggacttcattccccag
tgcagtggccatggcagcttcaaaatggacctgtgtggttgtgtgtgtgaggacggctgg
acgggcaaaaactgctctgagcctcgctgcccagacgactgctccggacagggagtgtgt
atggagggcgagtgtgtgtgtgaccgtgacttcggaggggacaactgctcggagccccgc
tgcccggcggactgctccggtcgagggctgtgcatggatggggagtgtatctgtgaggag
aacttcactggggaggactgtacactgggtcgctgcctcaatgactgctctgaccagggg
ctgtgcaccaacggaacctgccagtgtcgcccgggatacgtaggagaagactgttccttg
gcctactgcgccaacaactgcagtcagaagggcatttgtaaagaaggcttctgtgtctgc
caagatggcttcgctggagaagactgctctgcagtggctccggctctgaacctgcgcatg
cggggagtgacggagcataccattgacctggagtgggaggggtcggtgttgatgacagac
tacctagtcacctacgtggccaccagcccaggtggggtccagctggagatcaggatccct
gggaacacaaccacctgcagtatcccagacctggagcctggcatcgagtacaacatcaac
gtctacgctgtgctcaacaacgtcatcagtgcccctaccaacactcaggtgtcaacctat
ctctcaaatccagacggtttactcttcaaatccatcacggagacatccgtggaggtgcag
tggcaacctttctactactcatttgatggctgggaaataagcttcattcccaaggacaat
gatggagggatgacagcccagctacccagcaccatcacttcgttccaccagacaggcctg
aggccaggggaggagtacaccgtcaacctggtagctctgagggaccaaggccgcagccag
cctgtatccgccaccgtcaccacattgattgatgggccgacacagatgatagtgcgtgat
gtctcggactcagtggccttcgtggagtggaccaatcccaaggccaagatggaccagata
gtgctgcgttatggcctggtaggagaggacatgcccaagactactttccgtctgcagccc
accctcagccagtactccctgcagatgctgaggccaggctcgcgctatgaggtgtccatc
agtggtgttcgcaagggcaatgagagtggaacaatctccacagaattcagcaccgttctg
atgttcctctcagagatcgacgcgcccaagaacttgcgagtgctgtccaagttctccacc
gccctggagctggagtgggacaacagcgaggcggaggtagaggggtaccaggtggtctac
agcaccctagcaggggaccaatacgagaaggtcattgtcccactcaacgatggacccacc
agcaagaccacactcacaaacttgttgccaggtacagagtatggcattggcatatcggct
atgcttggcaccaaccagagttctcctgccacaatgaacgccagaactggtctggatgtc
cccatggacctaactgtgacagcgtccacagacaacaccatcaccctgctgtggggggtg
gtccaggggcctatcgaccaatacatggtcacctacacctcctcatctggcctgaccacg
gaggtgaccgtccctaaggacgtgaccaccaccacgctcaatgatctggagccaggcaca
gaatataccatcactgtaactgcccagaggggaaggcagcaaagcactgcagccaccatc
gatggcttcacaggcttccgccccatcatagcgctctacttgtctgatgtcacgtgggac
tcggtgacggtggcatggagtgccccttccccacccgcagacctctacatcctcacctat
agctctgaggacggcactgacacctccaaggttaccctggacggatccaagacccggtcc
tctatcaaggggctcctgccctccacagagtacaccgtcagccttatcaccatacaggga
gaggtgaagtctgaggctgtcacagccacgctcaccacaggaatggatccacctaaagag
atgactgtgtcatatgccactgaagactccgtcatcatatcatggttgagaccattcgct
cccttcgactactacaagatgtcctatcaatcagaaagagggacagtggacagcgtggta
attgacaatgacgtcactaactacaccctatccagcctccacccagcaacagagtatgag
atcaacctgaacgttgtgcggggcagccaggagagcaagtccatcaccaccagtgtcttc
acagcgatggacatgccaatggaactaacagccctcaacattaccccacaaggagcttta
ctccggtggaaccctcctctgtccagcgttgacaactacgtgttcaccctcacctgcaac
caggtgacagctaataccttcctagtggaaggtgtgaaacaggagcaccagcttagtaaa
ctcaagcccagcaccacctactctgtagccctctacgccactaagggacccttgaccagt
ggaaccgtcatcgccaactttgaaacacccatggacgctcctctgaacctaacggctagc
gaggtgaaccaccgcagtgccctcatctcctggcaaccgcccatcgcagacatcgacaac
tacatgctcacatacaaatcagtggacggcaacagaaaggagctgatcctggatgctgag
gacacttggatccgtctggaggggctggcagagaccacagaatacactgtgaggttgcag
gctgccaggggattagagaccagcggaatcgtctctacggccttcacaacaggaaaccgt
ctgtttgccaccccccagaactgtgcccagcatctgctgaacggggagtccctcaatggc
gtctacaccatctacatcaacagagacgccaatcagggagtgcaggtctactgtgatatg
accacagacgaaggaggctggattgtgttccaacgtcgtcagaacggcctgacagacttc
tccaggaagtggagtgactacagggtcggctttggaaacctagaggatgaattctggctc
ggtttggacaacatacagaagctctcagctcaaggtcgctatgagctccggatcgacatg
aaggatggccaggagtctgtctacgccagctatgacaagttcgccattggagacgccagg
aatctatacaaactcaggataggagagtacaatggaacagctggggactcgctgagctat
caccaaggccgtcccttctccaccaaggacagagacaatgacatcgccgtgaccaactgt
gctctgtcctacaaaggagcctggtggtacaaaaactgccatcgggccaacctgaacggg
aaatacggcgagtcgagacacagtcagggtatcaactggtaccactggaagggccatgag
ttctctgtcccgtttgtggagatgaaaatgaggccgttcaactaccgcagcatcagtggc
aagcgaaggaggtccactcctccagaataa
DBGET
integrated database retrieval system