Salmo salar (Atlantic salmon): 106601115
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Entry
106601115 CDS
T04363
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106601115
03015 mRNA surveillance pathway
106601115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106601115
03041 Spliceosome [BR:
sasa03041
]
106601115
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106601115
Spliceosome [BR:
sasa03041
]
Complex C
Other components
EJC/TREX
106601115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
DUF5097
Aconitase_C
Motif
Other DBs
NCBI-GeneID:
106601115
NCBI-ProteinID:
XP_014048527
UniProt:
A0A1S3R9I9
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All DBs
Position
ssa01:32707871..32713540
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AA seq
694 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQVRRPTIPGVGGGRGRGINL
LRRGLSDISGGPGGPPVKQRDIEGALLRLAGDQRGRRDSRHDSDAEDDDDVKKPVLQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEVQAEQERKKVEGERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNTKIVKYIRTK
TKPPIFFLPGRMCSATQKLLDESQKKMNIMFEERREAFAEHLNKMEARPRRQSQRDTALG
KDLKKEDREEGKPTGQVVKVTGNRFDVEMEEEDEATIEEEERDEGIKRKEDRKKKPVEKV
GEQESKKGGTKADEMEEAEEDSQDTRIVEFRDVGEQMEATAVVREAEGQARDGDQKMEDS
PVEVGNEKGVEEQQPVKVEKEPLHGQDLTAVSDNQEKSIEMQPTEDEEPRTEVATPLLSE
CNPSVEVSDVTSMAPEVQIPLLEAGTEPEPLTTEQSQEADQVVIKQTTNAQPAQAQDDAA
APKELAPPSKEASRGRKKSKDKKGGGGGRSSSSSSSSSSGSSSSGSSGSSSSGSSSRSSS
SSGSSSSSSSRSRSRGRKDKKRRRRPSERDRERKKAVVERSHKSSKGSGRESKGSKDKIS
KSDRNRTTSEGSRSGKRSSRGDRDRKSDRKEKRR
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgggatctttgcaagcccagcttgagaaagcgaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggtcgggatcctaatgaattgagaccgggc
caagttagacggccgaccatcccaggtgttggaggaggtagggggcgaggaatcaacttg
ttgagacgtggactctccgacatcagcggtggaccaggaggacccccagtgaaacagagg
gatattgaaggggccctcctgaggctggccggtgaccagagagggaggagagattcacgc
catgacagcgacgctgaagatgatgacgatgtcaaaaagccagtgttgcagtcatcagta
gtagctacctccaaggagcgtacacgtcgagacctgatccaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacattacagaaattc
aagcaggaatctaatgtggcaacggataggcaaaagaaacgcattgagattgaacaaaaa
ttggaagttcaagctgaacaagagcgcaaaaaagtagagggcgaaagacgagagctcttt
gaggagaggcgtgccaagcagacagagctgagactgttggaacagaaagtggagcttgct
cagttgcaagaggagtggaatgtgcacaacacaaaaattgtcaagtacatccgcacaaag
accaagccacccatcttctttctgcctgggaggatgtgctcagccactcagaagctctta
gatgagtctcagaaaaaaatgaatattatgtttgaggagagacgcgaggcatttgctgag
catctgaataagatggaggctcggcctcggcgccagtctcagagggacaccgctcttggt
aaggacctgaagaaagaagatcgagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaaccggtttgatgtggagatggaggaggaagatgaggcaacaatagaggaggaa
gagagggatgagggtataaagcgtaaggaggacagaaagaaaaagccagtagagaaagtc
ggggagcaggagtctaagaagggggggactaaagcagatgagatggaggaggctgaggaa
gacagtcaagacactagaatagtggagttcagagatgtgggggagcagatggaggctact
gcagtagtgagggaggctgaagggcaggccagagatggggatcagaagatggaggatagt
ccagtggaggtaggtaatgagaaaggagtagaagagcagcaaccggttaaggtagaaaag
gagccccttcacggtcaagacctcacagctgtgtcagacaaccaggagaagagcattgaa
atgcaaccaaccgaagatgaagagccacgtacagaagtggccacacccctgctctcagag
tgcaaccctagtgtggaagtctctgatgtaacatctatggctcctgaggttcagatcccc
ctactggaggctggaacggagccagagccactcacaaccgagcagagccaagaggctgat
caagttgtcataaagcagaccactaatgcccagcctgcccaggcccaggatgatgctgcg
gctcccaaggagctggcgccgccgagcaaggaagccagcaggggacgtaaaaagtcaaag
gacaagaagggaggtggtggtgggagaagcagcagtagctcatctagcagctcctccggc
tcctcgtccagtgggagctccggctcctcctctagtggctcctccagcaggagcagctcc
tccagtggcagctcctccagctcttctagcaggagccgcagccgagggaggaaggacaag
aagcgtaggaggaggccatccgagagggacagggagaggaagaaggcagtagttgagagg
agccacaagtcatccaagggcagtggtcgtgaatccaaaggttccaaagataagatctcc
aagtctgacaggaacaggaccacctctgaaggcagccggtcagggaagaggtcctctcgc
ggtgacagggatcgcaagtcagataggaaggaaaagaggcgttaa
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integrated database retrieval system