Salmo salar (Atlantic salmon): 106601810
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Entry
106601810 CDS
T04363
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106601810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sasa03009
]
106601810
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106601810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Utp13
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
PEP5_VPS11_N
NBCH_WD40
Beta-prop_VPS8
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_Vps41
WDR54
Beta-prop_NUP159_NUP214
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
106601810
NCBI-ProteinID:
XP_014049679
LinkDB
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Position
ssa03:82153735..82180366
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AA seq
809 aa
AA seq
DB search
MAKSNLQFKTNYAVSSTIEPFYKGGKVQISKDEKFIFCTCGTRVNVLQIVTGKIVHSIEQ
DDQEDITSFALSLDDEILVTASKALLLKQWDWKQAQCTRSWRAIHNVPIASMTFDPTSTL
LATGGCDGTIKLWDVVKQYCTHNLKGSSGVVHLVEFHPDISLLQLFSSASDCGIRMWDLR
SSQCLCVLQSHYSPVTSLAFTSDGASMVSSGRDKICTVWDLKSRTARRTVPVYEAVESVV
LLPEDEDFSEIGVKTKEIHFITAGSKGVLRVWDASSARCVFAQTLPSAPPAGGSEEGGEE
YGDPRSLTYCLPLPSSLRLATVTAEHNILLYQLPSFTAQQQFVGFNDEVLDVKFLGKGDT
HIVVATNSSQLKVFDLATSSCKILYGHTDTVLSLDVFKKGSLFVSCAKDKSVRVWRQDPD
SGQVCCVAQGCSHGNAVGSITCSRMKESFVVSGSQDCTIKVWDLPETIPETDGDMFQLTA
RVTEKAHDKDVNSVAVSPNDKLLVSGSQDRLAKLWSLGAPGADLALLGVFRGHRRGVWCV
QFSPMDQVLASSSADGSVKLWSLQDFSCLKTFEGHDASVLKLIFVSRGTQLLTSGSDGLV
KLWTIKTNECVKTLDAHQDKVWGLHATRKDDRVVTASADSNITVWTDVTEVEQAEEQAKQ
EDQILKKQELSNLLHEKKFLKALGLAISLDQPHTVLKVIKAIRQGEDGAKQLEKTVLKLR
QDQKESMLRYCAMWNTNARSCLDAQAVIQVMLTHLSPEELLQYQGARAHLEGLIPYTERH
MQRIGRLLQASMFLDYMWQKMRVTGAPAR
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaagcaatctccagttcaagaccaactatgctgtttccagcactatcgaacca
ttctacaagggaggaaaagtacagatcagtaaagatgagaaatttatattttgtacgtgt
ggcacacgtgtcaacgtcttgcaaatcgtcactgggaagattgttcacagtattgaacag
gatgatcaggaggacattacatcattcgccctcagccttgatgatgagatcctggtaaca
gccagcaaggctctgctgctgaagcaatgggactggaagcaggcccagtgcacacgttcc
tggagggccatccacaacgtgcccattgccagcatgacctttgaccccacctccacgctc
ctggccacaggaggctgtgatggcaccataaagctgtgggacgtggtgaagcagtactgt
acacacaacctgaagggctcctctggggtcgtacacctggtggagttccatccagacata
agtctactgcagctcttctcctcggcgtcagactgtggcatcaggatgtgggacctgcgc
tccagccagtgtctgtgcgtgctgcagagccactacagccctgtcacctccctggccttc
acctccgatggagcctccatggtcagctctggcagggacaagatctgcacagtgtgggat
ctgaagagcaggactgccaggaggacagtgcccgtctatgaggctgtggagagtgttgtg
ctgctccctgaggacgaagatttctctgagatcggggtgaaaactaaagagatccacttc
atcacagcaggcagcaaaggtgtgctgagggtgtgggatgccagctcggcccgctgtgtg
ttcgcccagacgctcccctctgctccccccgcggggggctctgaggaggggggggaggag
tatggagacccccggagcctcacctactgcctccccctgccctcctccctcaggctggcc
acagtcacagcagaacataacatcctgctctaccagctgccctccttcaccgcacagcaa
cagtttgttggcttcaatgatgaggtcctggatgtgaagtttctgggcaagggtgacact
cacattgtcgtggcgaccaacagctcccagctcaaggtgtttgacctggccaccagcagc
tgtaagatcctctacggacacacagataccgtcctgtcactcgacgtgttcaagaaagga
tccctgtttgtgagctgtgcaaaggataagtcagtgcgtgtgtggagacaggatccagac
agtggtcaggtgtgttgtgtggcccagggctgcagccatggtaacgctgtgggctccatc
acctgctccaggatgaaggagtcgtttgtggtgtctggtagtcaggactgcaccatcaag
gtgtgggatctcccagagaccatcccggaaacagacggtgacatgttccagctgaccgcc
cgggtcacagagaaggcacacgacaaagatgtgaacagcgtggcagtgtcccccaacgac
aagctcttggtgtctggttcccaggaccgcctggccaagctgtggtccctgggggccccc
ggagccgacctggccctgctgggggtgttccggggccaccgccggggggtctggtgtgtc
cagttctctcccatggaccaggtgctggcatcctcctcagccgacggctctgtcaagctc
tggagcctccaggacttcagctgcctcaagacgtttgaaggccacgatgcctctgtgctg
aagctcatctttgtgagcagagggactcagctactcacaagtgggtcagatgggctggtc
aagctgtggaccatcaagaccaatgagtgtgtgaagacgctggatgcccaccaggacaag
gtgtggggtctccacgccaccaggaaggacgaccgtgttgtcaccgcctcggccgactcc
aacatcactgtgtggacggacgtgacagaggtggagcaggcagaggagcaggcgaagcag
gaagaccagatactcaagaaacaggagctgtctaacctgcttcatgagaagaagttcctg
aaggctctgggcctggccatctccctggaccagccacacactgtgctcaaagtcattaaa
gcgatccgccagggggaagatggtgctaagcagctggagaagactgtgctgaagctgcgc
caggaccagaaagagtctatgctgcgctactgtgctatgtggaacaccaacgcccggagc
tgtctggacgcccaggctgtgatccaggtgatgctcacacacctctcccctgaagagctg
ctccagtaccaaggagcacgcgcacacctggagggactcataccttacactgagagacac
atgcaaaggataggccgtctgctgcaggcctccatgttcctggactacatgtggcagaag
atgagagtgacaggagctccagccaggtga
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integrated database retrieval system