Salmo salar (Atlantic salmon): 106601970
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Entry
106601970 CDS
T04363
Symbol
smg1
Name
(RefSeq) SMG1, nonsense mediated mRNA decay associated PI3K related kinase
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106601970 (smg1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sasa01001
]
106601970 (smg1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106601970 (smg1)
Enzymes [BR:
sasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
106601970 (smg1)
Protein kinases [BR:
sasa01001
]
Serine/threonine kinases: Other
PIKK family [OT]
106601970 (smg1)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106601970 (smg1)
mRNA cycle factors
Common to processing body (P body) and stress granule
106601970 (smg1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMG1
PI3_PI4_kinase
SMG1_N
FATC
FAT
HEAT
HEAT_ATR
Motif
Other DBs
NCBI-GeneID:
106601970
NCBI-ProteinID:
XP_014049886
UniProt:
A0A1S3RCN8
LinkDB
All DBs
Position
ssa03:88463074..88590251
Genome browser
AA seq
3174 aa
AA seq
DB search
MSRKALGFRLSSAHKLQRNWNDWQPRGDSVSAASQDGVKCIATRDLGPAAAAVYDPTAVG
VTTSDRPVSPPLLHNDAFPDTADTLDEGGGYEAAGGFSDDTFGWKSLGQELRINDATADL
TTFQQHGNRALASKDMRKSHDRGMSHSDESRLSNLLRRVSREEDRDRRLATVRQLREFIT
HSDNKVALVKQLDTILSTLNDILNESRSSNTTKVLEQEIPASMEERGMEEVEPASVEDKP
AAEKAVEEGEGTIKGHDLFGYVGIEAVLDQMRRKTMKAGFEFNIMVLHNALNEDPVICLQ
TCNSLQVISSSLNTELLQRCVDVCRVQLVHSAVRVRQAYGKLLRTIPLDVTLSNHSHPEI
EEISLVVRRHMSRTPSSTFHPQDFSDLISFILYGSQHRGGKEPWLERLYHSCQRLEKRDG
VSGAAGGVCVPRGLLKTEAVLWQWAVWEAAQFTVLSKLRTPLGRAQDTFQTIEGMIRSLA
AHSLNTEQELSQWSAGDTDDGYHSNQLRLALLLQFLENLEKLMYNAYEGCANALTAPPKG
IRTFFYTNRQTCQDWLTRIRLALMRVGLLSGQPAVTVRHGLDLLTEIQNSSTLGPELEAP
LVMLVEALCELHCPEAIQGLAAWSLTNTGKSLAWVSSVALQAEGRFEKAAVEYQEQLCAV
TGMDCSIKGFDRSLLKLAGANSSNTASPKHNGNGDGRKTVLLKSNECSSEVLNLLANKAC
QCYVALGDWSSVQEWQASVHALKKNPGNPAAASVHLKTDFNYVRALSCFEDGDFQECRAQ
LELLAGERDDYGLLNSTSTGSKDKLDLKRLLPAVLSPDPSELQKAIEVQLLRSAVAAMTT
ANHEQEQKAMPTSDTLVRYLKQTGRICLGPLRLSTLTLSDGLPTLATLQLHCCSALENTL
SGQEDCLIPLYSEALSTCKQQDVQPWLHTLRYTIYQRQLLLRLKGSSAPLDGHLMELCLT
AVKFARKQGNIALATRLLGQCSEGEEEEEGGEEGLSRAFRRLSLAGVVGEKWGPELQIEK
AKVLCTAGQSMAAMEMLSSCALSFCRSGKCERAACRSVLTLCKWLLADWKDMTPQLKQVV
KRSGVMTPGVAALPPISRNITALLELPLEDQGMPRITAETTVSVGVGEPDLVLGQLYQLS
TSQAPEVAKSWAALASWAYRWGRKVVDNASQGEGVPLLPGEKKEIEELLPECTSEEDKEN
IFSILGQAMCRPAGIQTLYLGCCRRCLVPFPASLLSIHLFLCPSMSLFFLRQVPIDEDDP
KLLLTNQNSKQSNDDIIVMATLRLLRLLVKHAGELREGLELGLASTPTAPWRGIIPQLFS
RLNHPEAYIRQSICSLLCRVAQDSPHLILYPAIVGSLSLGGEAQHAGNKLPSALPTFLGS
MQGEGLCEEGEGTLGSNPASQEEDGRGEEFPALCSSQDQAMMHDCYSKIVDKLSAANPTM
VLQVQMLVGELRRVTLLWDELWLGVLQQQHMHVLRRIQQLEDEVKRVQNNNTLRKEEKVA
IMCEKHSALMRPVVFALDHVRGITTTPAETPHETWFQQTYGDAITSALERLKSPHNPANP
ASSWVPFKQIMLSLQQRAQKRTSYLLRLDHISPRLAAMATTEMALPGEVSATDALTIQSV
GNTITILPTKTKPKKLHFLGSDGRNYPYLFKGLEDLHLDERIMQFLSIVNTMFTKVNQQE
RPHFHARHYSVTPLGTRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKAQDSFQQQPQPL
PLVPRPSELYYSKIGPALKGVGLSLDVSRRDWPLSVMRDVLKELMASTPPNLLAKELWCS
CTTSSEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGK
SLRVPEKVPFRMTHNIETALGVTGVEGIFRLSCEQVIQMMRRGRETLLTLLEAFVYDPLV
DWTAGGEVGFAGAVYGGGGQQAENKQSKREMERDITRSLFSSRVAEIKVNWFKNREEMLG
VLPQVEGAVEEYLTLQKLLSQGDKMTTKILEEMSFLEGAESCSDHLILTLEHRYSEHTQL
ASRQRTVQELIQGKQGDLDQWMSQYQAAFSSLEATQLASLLQDISSHIDLGPPSYVPATA
FLQNAGQAHLISQCEGLEAELGSLLQQRRGALRGCLEQLHSYATVALLYPRAVLLRHRAH
LWKQWLEELLCDMTVEHCQQISRQYEVQFAPQPPLASCQFLSSVELALQHQASETNTRVL
RQAERVKAEGATVHACEEQLQEIERCISVFLLENPEQGSLSLATIISSALCTLTRRNLVM
EGAAAAAGGQLVELTSRDGAWFLEELCSMSGNITSLVQLLGQCQLLPHDLDLPSPQETAQ
TVYLANAVYTCLQELNTNFRQIIFPEALRCMLKGEATLETMLSELDLLVEQCADGVSLQG
LADALHTHLRSAAMGLEHEADTQCLHITRMLRAQYSQLMQPPGGSMDAVGQDSPKMSAGQ
MLLVAFDGMFAQLETAFGQLTEKMISMEVPPAWRKVDVMREARAAQVHFFHSGPHRHVLE
EIFFLKRLQTIREFFRLCGSFAQTLSGTCPPAADDPPPSNGPVVGLGGVGLPGKPLFRGA
AAVVVSEEQMTRPIKAFTAEFVRQMLIGLPTQTLGLALCSTLSALGLDLTAQVDAKDFGA
DGKVSLDELCKQTVVQGLGAGRLSQLLLNRGTVLASSYDTAWKKLDLLRRLESSLDAAKV
SLQRTQLHITMFQWQHEDVLGPRTQPMSVSPPPRSIILSSMKKKIYKLSQDEAAIAAVQE
KLASLEGSIEQRLKWAGGANPALAPVLQDFDLTIAERRALVALESQRTSQVTFLCSTILN
FEGLRMRTPEALSMDSALFELLKRCQQTCSYAAQFNTSVSSIELQLLHRLSPALELPIGS
PDWLACAQKQLGQELATQGAVQEEREQQLDVATESLQLLVDSIKGILSNHNRQLADVKHL
LRAMAKDEENALAEGEEVTYEGSVRQFLLEYKAWQDNVQIVLFTVVQATGQPRGGGASQE
GVELLQEIPATLKELHTQSTSVYNRLVGFASPLVTERGGDCSSPTSTAQTSFAAAVRCSG
VKTQTDSMSQNSRKLLPRNLGTPADTPPSAQMMTSKGLNPSPKRAVRDPKTGRAVQERNS
YAVSVWKRVKAKLEGRDVDPNRRMSVTEQVDCVIKEATNVDNLSQLYEGWTAWV
NT seq
9525 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtaaagcccttgggtttcggcttagcagcgcccacaaactgcagcgaaactgg
aatgattggcagcccagaggcgacagcgtgtcagcagctagccaggacggtgtgaagtgc
atcgccaccagagacctgggtccagctgcagcagctgtatacgacccaacagcagtggga
gtaacaacctctgaccggcctgtctccccacctctcctacataatgatgccttcccagac
accgcagacacactggacgaaggcggaggatatgaagctgcaggagggttcagtgatgat
acttttggttggaagtcgttggggcaagagttgaggatcaacgatgcgaccgccgatttg
accacttttcagcagcatggaaaccgtgctttagcttctaaggacatgaggaaatcccac
gacagagggatgtctcactccgatgagtctcgcctgtccaacctcctgcgccgtgtgtcc
cgtgaggaggacagggaccgccggctggccactgtcagacagctccgggagttcatcact
cactctgacaacaaagtggccctggtgaaacagttggataccatcctcagtaccctgaat
gatattttgaatgaaagtcgttcatccaacacaactaaggtgctggagcaggagataccc
gcctcgatggaggagagagggatggaggaagtagaaccggcatcagtagaagacaaacca
gcagcagagaaagctgtggaggagggagagggaaccattaaaggtcatgacctcttcggc
tacgtgggcatcgaggctgttctggaccagatgagacgcaagaccatgaaggctggcttc
gagttcaacatcatggtcctccacaacgccctgaatgaggacccagtcatctgcctccag
acctgcaacagccttcaggtcatctcctcctcactcaacacagagctgctgcagaggtgt
gtggatgtttgtcgtgtccagcttgtgcactctgcggtgagggtgaggcaggcgtacggc
aagctgctgaggacaatccctctggacgtgacgctcagtaaccacagccacccagagata
gaggagatctccctggtggtccgtcgccacatgagccgcacccccagcagcacctttcac
ccccaggacttcagtgacctcatcagcttcatcctctatggcagccagcaccgcggaggt
aaagaaccgtggctggagcgtctgtaccacagctgtcagcgtctggagaagcgtgatggt
gtctccggtgcggctggcggtgtgtgtgtaccgcggggtctgctgaagactgaggcggtg
ctgtggcagtgggcggtgtgggaggcagctcagttcacagtgttgtctaaactccgtacc
ccgctgggacgggcacaggacaccttccagaccatagagggtatgatccgcagcctggcg
gcccacagtctgaacactgaacaggagctcagccaatggagcgccggcgacacggatgac
ggttaccatagcaaccagctgcgtctggcgctgctcttgcagttcctggaaaacctggag
aaactgatgtacaacgcctacgagggctgtgccaacgctctgaccgcaccgcccaagggt
atcagaacattcttctataccaaccgtcagacctgccaggattggctgactcgtatccgc
ctggccctgatgagggtggggcttctgtccggccaaccagcagtcaccgtccgccatggc
ttggacctgctcactgagatccagaacagcagcactctgggtccggagttggaggctcct
ctggtgatgctggtagaggctctgtgtgaacttcactgtcctgaggctatccagggttta
gctgcctggagtctcaccaacactggcaagagtctggcttgggtcagctctgtggcacta
caggctgaggggcggtttgagaaggctgcggtggagtaccaggaacagctgtgtgccgtg
acagggatggactgttccattaagggcttcgaccgctcactcctcaaactggccggagcc
aacagctctaacacagccagccccaaacacaacggcaacggtgacggcaggaagacggtt
ctcctcaagtccaatgagtgttcctccgaggtgctcaacctccttgccaataaggcatgc
cagtgctatgtggccctcggcgattggtcctcggtgcaggagtggcaggccagcgtgcac
gccctcaagaagaaccctggtaaccctgccgcagcgagcgtgcacctgaagacagacttc
aactacgtacgggctctgagctgcttcgaggacggagacttccaagaatgccgtgctcag
ctggagctcctggcgggggagagagacgactacggcctgctcaactccacctctacgggc
tccaaggataaactagacctgaagcgtctcctcccggcagtgttgagtccggacccctca
gaactgcagaaggccatcgaggtgcagctgctgcgcagcgctgtggccgccatgacaacg
gccaatcacgagcaggaacagaaggccatgcccacctcggataccctggtccgttacctg
aagcagacgggtcgtatctgtctgggtcccctccgcctctccaccctcaccctctctgac
ggcctgcccactctggccaccctgcagctacactgctgctctgccctggagaacacactc
agcggacaggaggactgtctgatccccctgtacagtgaagctctcagcacctgtaaacaa
caggatgtccagccgtggctccacacactgagatacaccatctaccagagacagctactg
ctcaggctgaaaggctcctctgctccgctggatggccacctgatggaactatgtctgacg
gccgtcaagttcgcccggaaacaggggaacatcgccctggcaacgcgtctgctgggccag
tgcagcgagggagaggaggaggaggagggaggagaggaagggttgagccgtgcgttcagg
cgtttgtcactagcgggtgttgtgggggagaagtggggacctgaactacagatcgagaag
gctaaagtcctctgcaccgcgggtcagtccatggcagccatggagatgttgagttcctgt
gctctgtctttctgtcgctcagggaagtgtgagcgtgctgcctgtcgctccgtcctcact
ctgtgtaagtggctgctggcggactggaaggacatgacccctcagctcaaacaggtggtg
aagaggtcaggagtcatgaccccaggggtcgccgccttgccccccatcagccggaacatc
acagccctgctggagctacccctagaggaccagggcatgccccgaatcacagctgagacc
acagtgagtgtgggtgtaggagaaccagacttggtcctggggcagctctaccagttgtcc
accagtcaggctccggaggtggccaagtcctgggcggctctcgccagctgggcctatcgt
tggggacggaaggtggtcgacaacgccagtcaaggtgaaggtgtgcccctgctcccggga
gagaagaaggagatcgaggagcttctcccagaatgcaccagtgaggaggacaaggagaac
atcttcagtatcctgggtcaggccatgtgtcgacctgctggaatacagactctctatttg
ggatgttgtaggagatgccttgtccctttccctgcatctctcctatccatccatctcttc
ctctgtccctccatgtctctcttcttcctccgtcaggtacccatcgatgaggatgacccc
aagctgctgctgaccaatcagaacagcaagcagagtaacgacgatatcatcgtcatggcg
acgctgcggttgctacggctgctggtgaagcacgccggggagctgagggaggggcttgag
cttgggctcgcctcaacccccaccgccccctggagaggcatcatcccccagctgttctct
cgtctgaaccatccagaggcttacatcagacagagtatctgtagtctgctgtgtcgcgtt
gcccaggactcgccacacctcatcctgtaccctgctatagttggatcactgtctctggga
ggagaggcacagcacgcaggaaacaagctcccgtcggccctgcccaccttcctgggcagc
atgcagggggagggcctgtgtgaggaaggggaggggacactgggcagtaaccccgcctcc
caggaagaagatgggcggggtgaggagtttcctgctctgtgttccagccaggaccaggcc
atgatgcatgactgctacagcaagatagtggacaagctgtctgcagccaaccccactatg
gtgttacaggtgcagatgctagtgggagagctgcgccgcgtgactctgctgtgggatgag
ttgtggctgggcgtcctgcagcagcagcacatgcatgtcctgcgcaggatacagcagctg
gaggacgaggtcaagagagtgcagaacaacaacacactacgcaaggaggagaaggtggcc
atcatgtgtgagaagcactctgctctgatgcgtcccgtggtgttcgctctggaccacgtg
aggggcatcaccaccacgcccgcagagaccccccacgagacctggttccagcagacctac
ggggacgccatcacctcggccctggagagactgaagagccctcacaacccagccaacccc
gccagcagctgggtcccgttcaaacaaatcatgctgagtctacagcagagggctcagaag
aggaccagctatctgctgcgtctggaccacatcagcccccgcctggctgccatggcgacc
actgagatggcgttgccgggcgaggtgtcggcaacggacgcgttgaccatccaaagtgtt
ggcaacaccatcaccatcctgccaaccaagaccaagcccaagaaactacacttcctgggc
tccgacggacgcaactacccttacctcttcaaaggtctggaggacctccacctagatgag
cgaatcatgcagttcctttccatagtcaacaccatgttcaccaaggtgaaccagcaggag
cgcccccacttccacgcccgccactactccgtcaccccgctggggacacgctcaggactc
atccaatgggtggacggcgccacgccgctgttcggcctctacaagcgctggcagcagaga
gaggccgtgctgcaggctcagaaggcccaggattcgttccagcagcagccccagcccctc
cctctggttccacggcccagtgagctctactacagcaagataggccccgccctgaagggg
gtggggctcagcctggatgtttcacggcgtgattggccgctcagcgtgatgagggatgtg
cttaaggagctgatggcatccacgccccctaacctgctggccaaagagctgtggtgctcc
tgtaccacgtctagtgagtggtggagggtcacacagtcctacgccaggtccactgctgtg
atgtctatggttggctacatcattggcctcggtgaccgtcaccttgacaacgtgctgatt
gacatgacgacaggagaggtggtgcacatcgactacaacgtctgcttcgagaaagggaag
agcctgcgtgtgcctgagaaagttccgttccgtatgacccacaacatagagacggccctg
ggagtcactggggtggagggcatcttcagactgtcctgtgaacaggtgattcagatgatg
cgtcgtgggcgggagacgctgctgaccctgctggaggcgtttgtgtacgaccctctggtg
gactggacggccgggggggaggtgggcttcgccggagccgtgtacggaggggggggtcag
caggcggagaacaagcagagcaagagagagatggagagagacatcacacgctccctcttc
tcctcgcgcgtcgctgagatcaaggtgaactggtttaagaaccgtgaggagatgttgggg
gtcctgccacaggtggagggggcagtggaggagtacctcaccctgcagaagctgctctct
cagggggacaagatgaccaccaagatcctggaggagatgagcttcctggagggggctgag
agctgctcagaccatctcatactcaccctggaacacaggtactctgagcacacccagcta
gcatctcgtcagcgtacggtccaggagttgatccaggggaagcagggtgacctggaccag
tggatgtctcagtaccaagcagccttcagcagcctggaggccacacagctagccagtcta
ctgcaggacatcagcagtcatatagacctgggccctcccagctatgtcccggccacagcc
ttcctgcagaacgccggccaggcccacctaatcagccagtgcgagggcctggaggctgag
ttgggctccctgctgcagcagcgccgtggggccctgcgaggctgtctggagcagctgcac
agctatgccactgtggccctgctgtacccgcgggccgttctgctgcgccacagggcccac
ctctggaaacagtggctggaagagctgctctgtgacatgactgttgagcactgccagcag
atttccagacaatatgaggtccagtttgccccccagcctccccttgcgtcgtgccagttc
ctgtccagcgttgagctggccttgcagcaccaggcgtcagagaccaacacgcgtgttctg
cgccaggcggagcgcgtcaaggcagagggagccacggtccacgcgtgtgaagaacagctg
caggagatcgagcgttgcatcagtgtgttcctcctagagaacccagagcagggctctctc
agcctggccaccatcatctcatcagccctctgcaccctcaccaggcgtaacctggtgatg
gaaggagcggcggcagcagcaggggggcagctggtagagttgacgtctcgtgacggggcc
tggttcctggaggagctgtgttccatgagcggtaatatcacctcattggtccagctgctg
gggcagtgtcagctcctcccacacgacctggacctgccctcaccgcaggagaccgcccag
accgtctacctggccaacgccgtctacacctgtctacaggagctgaacactaacttccgt
cagatcatcttcccggaggctctacgctgcatgttgaagggcgaggccaccctggagacc
atgctgtctgagctggacctcttagtggagcagtgtgcagacggggtctccctgcagggg
ctggccgacgccctgcacacacacctccgcagcgccgccatgggcctggagcacgaggcg
gacacacagtgtctccacatcaccaggatgttgagggcccagtactcccagctgatgcag
cctccagggggcagtatggacgcagtgggacaggactctcctaagatgtccgccggtcag
atgctgctggtggccttcgatggcatgtttgctcagctagagaccgccttcgggcagctc
acagagaagatgatttccatggaggtgccgccggcgtggcggaaggtggatgtgatgcgt
gaggcgagggcggcccaggtccatttcttccacagcggtcctcacagacatgttctggag
gagatcttcttcctcaagagactccaaaccatcagggagtttttcaggctgtgtggatcc
ttcgctcagacactctctggtacgtgccccccagcggctgacgaccctcctccctccaac
ggcccagtagtgggtctggggggtgtaggtctaccagggaagcccctgttccggggggct
gcggcggtggtagtgagcgaggagcagatgacccggcccatcaaggcgttcacagcagag
tttgtccgtcagatgctgattggtcttcccacccagaccctgggcctggctctctgcagc
accctgtctgccctgggcctggacctgacagcacaggtggacgccaaggactttggagct
gacggcaaggtgtcgttagatgagctgtgtaagcagacggtggtgcagggtctgggcgca
ggccgtctgtctcagctgctactgaacagaggtacggtgctggcatcctcctacgacacg
gcctggaagaaactggacctgctcagacgcttggagtccagcctggacgctgccaaggtc
tccctgcaacgcacccagctacacatcaccatgttccagtggcagcatgaggacgtgctc
ggccctaggacccagcctatgagtgtgagccctcctcctcgctccatcatcctcagtagt
atgaagaagaagatttacaaactcagccaggacgaggcagccatcgctgctgtacaggag
aagctggcatcactagagggcagtatagagcagcggctgaagtgggctggaggggccaac
cctgccctggccccggtgctccaggactttgatctgaccatcgcagagcgccgcgcccta
gtggccctggagagccagcgtaccagccaggtgactttcctgtgcagtaccatactgaac
tttgagggtctgcggatgcggacccctgaggccctgagcatggactctgctctgtttgag
ctgctgaagaggtgccagcagacctgctcctacgctgcccagttcaacacctccgtctcc
tccatagagctacagctgctccacagactgagcccggcgttggagctgcccatcggcagc
cctgattggctagcttgtgcccagaaacagctgggtcaggagctggctacccagggggct
gtgcaagaggagcgcgagcagcagctggacgtcgccacggaatcactgcagctattggtg
gacagcatcaagggcatcctgtccaatcacaaccgccagctggctgacgtcaaacacctt
ctgagggccatggccaaggacgaggagaacgcgctggcggagggggaggaagtgacctac
gagggcagcgtccgccagttcctgttggagtacaaggcgtggcaggacaacgtgcagatc
gtgctgttcactgtcgtccaggcaacgggccagccccgagggggaggggccagtcaggag
ggggtggagctactgcaggagatacctgctaccctgaaggagctacacacacagagcacc
agtgtgtataaccgcctggttggctttgcgtctccgttggtgacagagagaggtggagac
tgttccagccccacctctacggctcagaccagcttcgctgcagcggttaggtgcagtggt
gtgaagactcagacggactcaatgtcccagaattcacgcaagctcctcccccgtaacctt
ggcaccccggcggacaccccccccagcgctcagatgatgaccagcaagggtctgaatccc
agccccaaacgggctgtacgcgaccccaagacgggacgagctgtccaggagaggaactcg
tacgcggtgagcgtgtggaagagggtgaaagccaagctggaggggagagacgtggacccc
aacaggaggatgagtgtcactgagcaggtggactgtgtgataaaggaggccaccaatgtg
gacaacctgtcccagctgtacgagggctggacagcctgggtgtga
DBGET
integrated database retrieval system
