Salmo salar (Atlantic salmon): 106602585
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Entry
106602585 CDS
T04363
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
sasa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106602585
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106602585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106602585
04121 Ubiquitin system [BR:
sasa04121
]
106602585
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106602585
Enzymes [BR:
sasa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106602585
Spliceosome [BR:
sasa03041
]
Complex B
Other components
Prp19 complex
106602585
Complex C
Prp19-CDC5 complex
106602585
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
U-box type E3
106602585
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
106602585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_Gbeta
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_SCAP
NBCH_WD40
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_DCAF4
Beta-prop_HPS5
U-box
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_ACSF4
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Beta-prop_DCAF12
PROPPIN
Cytochrom_D1
B-prop_COPA_B_2nd
Tricorn_2nd
Nucleoporin_N
Peripla_BP_2
ATG16
zf-Nse
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
106602585
NCBI-ProteinID:
XP_014050776
UniProt:
A0A1S3RF47
LinkDB
All DBs
Position
ssa04:16019559..16028796
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPMNGQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVVAQAVASQPHVTAGGAGEPMEVSEQVGMIPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRTEDLSKYRQVATHAGLHSASVPGILSLDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCV
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEAAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHIGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGTDIRVYICKQWSEVLNFTEHTGVVT
GVAFGEHAQFLTSTGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtccctggtttgtgcaatatcaaatgaggtcccggaacacccgtgcgtgtcgccggtg
tccaaccaggtgttcgagcggcggctgattgagaagtacatagctgagaatggagcagac
cctatgaatggccagcctctgtccgaggagcagctgatagacattaaagtctctcacccc
atcagacccaaagctccctcatccactagcatcccagccatcctcaaagctctgcaggac
gagtgggatgcggtgatgctccacagtttcaccttgaggcagcagctgcagacgacgcgt
caagaactaagccacgccctctaccagcacgacgccgcctgcagggtcatcgcccgtctc
accaaggaggtcactgccgccagagaggctctggccactctgaagccacaggcgggattg
gtggtggctcaggcagtcgcttcccagccccatgtcacggctggaggtgcaggagagccc
atggaggtcagtgagcaggtgggaatgataccagagatcatacagaagctgcaagacaag
gccactgtcctgaccacagagagaaagaagagaggaaagacggttccagaagagctggtc
cgaacggaggacctcagcaagtacagacaagtggctacccatgctggtctccacagtgcc
agtgtgcctgggatcctgtctctggacctgtgtccctccgacaccaacaaagtgctcact
ggcggggctgataagaacgtggtggtgtttgataagaaggaggagcagatcatcgcaacc
ctgaaaggacataccaagaaggtcacctctgtcatctaccacccctctcagtcggtagtg
ttctcggcctctccagacagcactatccgcgtgtggtccgttaccgggggcaactgtgtc
caggtggtgcgggctcacgaggcgagcgtcactgggctctccctccacgccaccggagac
tacctgctcagctcctccgaggatcagtactgggccttctctgacatccaaacaggtcgt
gttctcaccaaggtcactgatgaggctgcaggatgtgctctgacctgtgcccagttccac
cctgacggtctgatcttcgggacggggacggccgactctcagatcaagatctgggacctg
aaggagcgcaccaacgtggccaacttccccggccacatcggccccgtcacctccatcgcc
ttctctgagaacggatactacctggctacaggtgcacaggacagctcagtgaagctctgg
gatctgaggaagctgaaaaatttcaaaaccatcaccctggacaacaactatgaggtgaag
tccctggtgtttgaccagagtgggacttacctggctgtgggtggcactgacatcagggtc
tacatctgtaagcaatggtccgaggtcctcaacttcacagaacacactggggtggtgaca
ggtgtggcctttggggagcacgcccagttcctcacctccactggaatggacaggagcctc
aagttctacagcctgtaa
DBGET
integrated database retrieval system
