Salmo salar (Atlantic salmon): 106602719
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Entry
106602719 CDS
T04363
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106602719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106602719
03009 Ribosome biogenesis [BR:
sasa03009
]
106602719
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106602719
Spliceosome [BR:
sasa03041
]
Complex A
U2 snRNP components
U2 related factors
106602719
Complex B
106602719
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
106602719
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
90S particles
Helicases
106602719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
Atrophin-1
AAA_29
Motif
Other DBs
NCBI-GeneID:
106602719
NCBI-ProteinID:
XP_014051004
UniProt:
A0A1S3RGW1
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All DBs
Position
ssa04:complement(24165381..24180524)
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AA seq
763 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRERDRDRDRDRDRDRDRDVKPSVV
PPNTMMAGGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILAR
HQSFVLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTL
PPQQQQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRA
LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSD
IKPEWLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgacgactactcaaataaaaagagatctgat
gggaaagacagagatcgcgacagggaccgtgacgagcgctctaaagacagggagagggac
agggaccgcgacagagatcgggaccgggaccgagatagggacgtgaagccctctgtcgtg
ccccccaacaccatgatggccgggggaggcatgcttcctctcaagcagacagccatgcag
cagcagatcaacccattcacaaacctgccccacacgccacgctactatgagatcttgaag
aagaggctgcagctgcctgtgtgggagtacaaggagcgcttcaatgacatcctggcacgc
caccagagctttgtgcttgtcggagagacgggctccgggaaaaccacacagatcccccaa
tggtgtgtggacatggtgaagggcttgggtggccccaagaaggcggtggcctgtacccag
cccagaagggtggcagccatgagtgtggcccagagggtggccgacgagatggatgtcatg
ctgggccaggaggtgggctactccatacgattcgaggactgcagctctgccaagaccata
ctgaagtatatgacagacggtatgttgcttcgggaagccatgaacgaccccttgctggag
cggtatggcgtgatcatcctggatgaggcccacgagagaacgctggccacggacatccta
atgggagtactgaaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagt
gccacgttagacgccgggaagttccaagtgtactttgacagctgtccgctgctgaccatt
cccggacgcacacaccccgtggagattttctacaccccagagccggagcgggactacctg
gaagccgccatccgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgt
ttgctgttcctcactggacaagaggaaattgacgaggcatgtaaacggatcaaacgggag
atcgacgacttgggacctgaagtcggagacatcaaagtcattccactatattccacactg
cctccccagcagcaacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcg
ataggaagaaaggttgtggtttcgacaaatattgctgagacatcccttaccatcgacgga
gtggtgtttgtgatcgatcccggttttgccaagcaaaaggtgtacaaccctcgtatcaga
gtggagtctctcctggtcacggcgatcagcaaagcctcagcacagcagagggcgggccgt
gccggcaggacacggccagggaagactttccgcctctacactgagaaagcctacaagacc
gagatgcaggacaacacgtatcctgagattctccggtccaacttgggttctgtcgtgttg
cagttgaagaagctgggtatcgatgacctggtgcactttgacttcatggacccaccagcc
ccggagaccctgatgcgggcactggagctgctcaactacctggcggcgctcaacgacgac
ggcgacctgacagagctgggctccatgatggcagagttcccgttggacccacagctggcc
aagatggtgatcgccagctgcgagttcaactgctccaacgagatcctctccatcaccgcc
atgctgtcagtcccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgag
tccaagatgcggttcgcccacatcgacggagaccacctgacgctcctcaatgtctaccac
gccttcaaacaaaaccacgagtctacacagtggtgctacgacaactttgtgaactaccgt
tcgctgatgtcggccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaac
ctgccccggcgcagcaccgaattcaccagcagagactactacatcaacatccgccgagcg
ctcgtcacaggctttttcatgcaggtggctcatttggagcgcacgggccattatctcaca
gtcaaggacaaccaggtggtccagctacacccgtctaccgtcctggaccacaagccagag
tgggtgctctacaatgagtttgtcctcaccaccaagaactacattcgcacctgctcggat
atcaaaccggaatggctggtgaaggttgctcctcagtactacgaaatgggcaacttccca
cagtgtgaagccaagaggcagttggagcgaattgttgccaaactccagaccaaggagtat
tcccagtactga
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