Salmo salar (Atlantic salmon): 106602916
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Entry
106602916 CDS
T04363
Name
(RefSeq) collagen alpha-1(XXIII) chain-like
KO
K24355
collagen type XXIII alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106602916
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106602916
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106602916
NCBI-ProteinID:
XP_014051385
UniProt:
A0A1S3RGH6
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Position
ssa04:complement(31609453..31749944)
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AA seq
540 aa
AA seq
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MGSHAKSENKKAMESINCLKSNFSHCLGGLLIVFCIMLSVCSMAFCFLVNFKTSYLEYRV
HTLEMERMFLIHPDASGQDENGTVPGLQDIIEKLVQERLTIALPKLRTAREVIQECSCPP
GPPGKRGRLGRQGNPGSPGSPGRDGYPGPLGMDGKPGAPGPMGSQGLPGTKGDKGDQGDM
GPRGDQGQAGPPGPPGPPGSPGLRGPSGNTGKDGPRGHLGEQGPPGRDGTDGLEGQMGPP
GRQGEDGQHGMLGPQGPPGLKGEQGHAGDQGRSGLDGLPGMKGEKGDTGDTGPQGDMGLP
GNKAVLDSYDIGLGHVFQGPPGPPGPPGGQGPKGESGSHGAPGADGDRGAKGERGDDGMP
GVAGEKGERGLMGLTGLAGADSKKGERGDSRFEDNLAQIISIAGPPGPPGPPGLQGFMGH
HGMPGPKGEPGEIVKGEKGDAGDRGPPGLRGIQGLPGSTGLVGLPGTIGRKGEQGLPGLD
GFPGLMGEKGDRGNRGDKGDSGMLGKKGLKGQKGEEGPPGLDQPCPVGRDGLPIPGCSHK
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgggatcccacgcaaaatcagagaataagaaggccatggaatctatcaactgcctcaaa
tcaaacttttcacattgtttaggcgggctgttaattgtcttttgcatcatgctgtcggtg
tgttctatggcgttttgttttttggtcaacttcaagacatcttacctggagtacagagtg
catacattggagatggagagaatgttcctgatccatcccgatgcatccgggcaggatgag
aatggaacagtacctggtctccaggatatcattgaaaaacttgtgcaagagagactgacc
atagcactgcccaaacttcgcactgccagggaggtcattcaagagtgctcctgtcctcca
gggcctccaggaaaacggggaaggctgggaagacaaggcaaccctggatctccaggctcg
cctggacgggatggttacccgggcccacttgggatggatgggaagcctggtgctcctggt
cccatgggaagccagggactgcctgggacaaaaggagacaagggagaccaaggagatatg
gggcccaggggtgatcagggtcaggctggccctcccggccccccggggccccctggctca
ccaggtctcagaggaccatctgggaacacagggaaggatgggcccagaggtcaccttggg
gagcagggtccgcctggtcgagatggaactgatggattagagggacaaatgggtcctcct
ggacgacagggtgaggatggacagcatggcatgcttggaccacaggggcctccagggcta
aagggggaacaggggcatgctggtgaccagggcaggagtggccttgatggactaccaggg
atgaagggggagaagggggacacaggagacacagggcctcagggggacatgggcttaccc
ggaaacaaggctgttcttgactcctatgatatcggccttggccatgtctttcagggcccc
ccagggccaccagggccaccaggaggacaagggccaaagggagaatcaggctcacatggt
gcacctggagctgatggggataggggagccaaaggggagagaggtgatgacgggatgcct
ggagtggcaggggaaaagggagagagaggtctgatgggcctaactgggcttgcgggagct
gacagcaaaaaaggagagagaggagattcaaggtttgaggacaatctggcccagattatc
tctatcgcaggccctcctggcccccccggacctcctgggctccagggattcatgggacat
cacggaatgcctggccccaagggggaaccaggtgagatagtgaaaggagaaaagggggat
gcaggtgacagaggacctcctgggttaaggggtattcagggtcttccaggttctacagga
ttggttggtctccctggcaccatagggagaaagggagagcaaggattgccgggattagat
ggtttccccgggctgatgggagaaaaaggggacagagggaacagaggagataagggtgac
agcgggatgctgggaaagaagggactgaagggacagaagggcgaggagggcccccctgga
ctggaccagccctgtcctgtgggtcgggatggattgcccataccagggtgttcacataag
tga
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