Salmo salar (Atlantic salmon): 106602925
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Entry
106602925 CDS
T04363
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106602925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106602925
Spliceosome [BR:
sasa03041
]
Complex B
Other components
Prp19-related factors
106602925
Complex C
106602925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
RRM_occluded
Nup35_RRM_2
zf-CCCH
zf-CCCH_4
RRM_YTH1
zf-CCCH_10
RRM_3
zf-CCCH_12
zf-CCCH_PARP12
zf-C2H2_16
Motif
Other DBs
NCBI-GeneID:
106602925
NCBI-ProteinID:
XP_014051414
UniProt:
A0A1S3RI18
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Position
ssa04:complement(32162365..32168566)
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AA seq
423 aa
AA seq
DB search
MATSLGANIYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSIKDDVPKSDVNKEYYTQN
MEREIGNSDGTRPVGLLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKSITTLYVGGLG
DSITDSELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIIKGRRLNV
KWGRSQGARGKEGREREGVTEMGMKLEPVPGLPGALPLPPVDEDAPTNYFNLGPNSAPPV
MNISLPPPPGVAMPPPGFGPPMFHSMDPMAIPHPMGMRPPGHVHYPSQDPQRMGAHASRH
GGS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatctttaggagctaatatttacaacagacaaaattgggaagacgcggatttt
cctattctctgccagacatgtcttggagagaatccttatattcgaatgaccaaggagaaa
tatggcaaggagtgtaagatatgtgccaggcccttcacagtgttccgatggtgtcctggg
acccgcatgcgattcaaaaagacagaggtgtgccagacgtgcagtaagatgaagaatgtc
tgtcagacgtgcctgctggatctagagtatggcttgccaatacaggtccgagacactggg
ctgtcaatcaaggacgacgtgccaaaatccgacgtgaacaaggaatactacactcagaac
atggaaagagagatagggaactctgatggtacacggccagtgggtctcctgggtaaggcc
cccagctctagtgacatgctgttgaagctagcccgcaccacgccttactacaagaggaac
agaccacacatctgctccttctgggtgaagggagaatgtaagagaggagaagagtgtccc
tacaggcatgagaagccaactgatcctgacgatcccctggcagaccagaacattaaggac
cgttactatggtatcaacgaccctgtggctgacaagctgctgaagagggcctccaccatg
cctagactggatacgccagaggacaagtccatcactacactgtatgtgggggggctcgga
gactccatcactgattcagagctcaggaaccatttctaccagtttggggagatccggacc
accaccatcgttcagaggcagcagtgtgccttcatccagtttgccacccgtcaggctgca
gagttggctgctgagaaatccttcaacaagctcattatcaaaggtcgcagactcaacgtc
aagtggggcaggtcccagggagcgcgggggaaggagggaagggagagggaaggggtgaca
gagatggggatgaagctggagccggtacctggactgcctggagcgctacctctgccacct
gtggatgaagatgcccctaccaactatttcaacctgggccccaactcagcccctcctgtc
atgaacatcagtctacccccaccccccggcgtggctatgccccctccaggctttggccca
cctatgttccactccatggaccccatggcgataccccatcccatggggatgaggcctcct
ggccatgtccactacccctcccaggatccacagcgcatgggtgcacacgccagtcgtcac
ggaggctcctag
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