Salmo salar (Atlantic salmon): 106603262
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Entry
106603262 CDS
T04363
Name
(RefSeq) protocadherin-1-like
KO
K16498
protocadherin delta 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
106603262
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sasa01009
]
106603262
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sasa04515
]
106603262
Protein phosphatases and associated proteins [BR:
sasa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106603262
Cell adhesion molecules [BR:
sasa04515
]
Cadherins
Protocadherins
106603262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
Glyco_hydro_26
Motif
Other DBs
NCBI-GeneID:
106603262
NCBI-ProteinID:
XP_014052137
UniProt:
A0A1S3RJX7
LinkDB
All DBs
Position
ssa04:39765204..39861067
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AA seq
1187 aa
AA seq
DB search
MELHLGAVLLWVLVLDCCGWAEAGILYRVQEEQPPSTLIGSLASDQGLPDSGHLYKLEVG
APYLRVDGKTGDIFTTEIPIDRETLRDCRSMVRGKPCFLEFEVSVTDLIHNQSPRLIEGR
IEVQDINDNTPQFPSPVLTISVPENTHLGALFSIPLATDRDSERNGVADYALTAGPDAAT
LFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPQRYSSALLRVVVADAND
NAPKFEKATYEAEVSENSPVGHSVLQVKANDSDMGPNGEIEYTLHQALDPVPKLLRIDRS
TGIIYVKGPLDREEISDLTFYVVARDKGPQPKSSKTFVTIQVTDQNDNSPAVEIRGIGLV
THSDGVANISEDMPVGTAVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASDSSTNKRKY
FLQTTTPLDYERVREYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPVFSPTLFEVAFA
EENQPGDKVVDVVATDADSGTNAELVYSIVADTSTRGLFEIDPDSGEVRARSSLDREHKE
RYEFRVTASDKGSPSHRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMPPLSAVGMVTV
LDMDQGENARVQLSVEPDGGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGEPPRS
SYVGVTINVLDENDNDPVVTKPSNSSFRLLSPLAAPESRVELVEAEDLDTGPNAEMVFSI
TGGNPYELFSISSTTGEITLAKELTRKHGGLHRLVVRVSDAGKPARHATAMVHIYVNETI
ANVSLVEALVGHSLYTPLETDIAGDPDYGLAAQRSNIVYGSLAGVAGVVMVIIVVVFIRH
RIQRETKSGYQAGKKETKDLYAPKQGPKNGKGKRGRKGKPSKSPKPLGEEEEVSLQKSLK
FNLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAT
NTFVGTGGDDNSTGSDQYSDYSYKASQPKYNSKQLPHRRVTFSTANPVQDASQHSYYDSG
LEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGEMEHPENDMRSIPDVAMTGNCTQ
ECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARLGGEEHRAHL
PPSRSAYSNSGHAPSQDFPLEEVPMSVATEFPSTSPPSHTPKREIYL
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcacttgggagcagttctgttgtgggtcctggtgttggactgctgtggttgg
gctgaggctggtatcctctaccgggtccaggaggagcagccccccagcacgctgataggc
agcctggcatcagaccagggcctgccagactctggtcacttgtacaagctggaggtgggc
gctccatacctgcgtgtggatgggaagacaggggacatcttcactacagagatccccata
gacagggagacactgagggactgccgcagtatggtcaggggcaagccctgcttcctggag
tttgaagtgtccgtcacagacctaatccacaaccagagccccaggctcattgagggccgc
atcgaggtccaggacatcaacgacaacacgccgcagtttccctcccctgtgctcaccatc
tctgttccagaaaacacccacttgggcgctctgttctccatccccctggctacagacagg
gactcggagaggaacggggtggccgactacgccctcaccgctgggccagacgcggcgacg
ctcttcggcctgcaggtggcggaagacaggggggagaagttgccccagctcatcgtcctg
ggcagtctggaccgggaactcaaggactcgtacgacctgacaatcaaagctgtggacgga
ggtaacccccagcgctatagcagtgccttgctgagagtggtggttgctgatgctaacgac
aatgctccgaagtttgagaaggccacgtacgaggcagaggtttcagaaaacagccctgtg
ggacactctgttttgcaggtgaaagccaatgactctgacatgggccccaatggagagata
gaatacacactacatcaggcattagacccagtgccaaaactcctgcgaattgatcgctcc
actggcatcatctatgtcaaagggcccttggatcgggaagaaatcagcgatttgacattc
tacgtagtggctagggacaaaggtccccaacccaaaagctccaagacctttgtgacaatc
caggtgactgaccagaacgacaattcccctgctgtggagatccgtgggatcggcctggtg
acccacagtgatggggtggccaacatatcagaggacatgccagtgggcacggcggtggcc
ctcgtccaggtgtctgacagggacgagggggagaatgcagtggtcacctgtgtggtggcg
ggggacgtgcccttccagctgcgcccggctagtgactcgtccactaacaagaggaagtac
tttctgcagactacaacccccttggactatgagagggtcagggaataccgtgtggagatt
gtggctgttgactctggcaacccagctctttccagtactaactcattgaaggtgcaggtg
actgatgttaacgacaactccccagtgttttccccaaccctgtttgaggttgcctttgca
gaggagaaccagccaggggacaaggttgtggacgtggttgccacggacgctgatagcgga
actaatgccgagctggtctacagcatcgtagcagacacatctaccaggggcctgtttgag
attgaccccgattcaggggaggtgagggcacggagctcactggacagagagcataaagaa
cgctatgagttccgggtcactgcgtccgataaaggttctcccagtcacagaggaacagcc
acggtcgtggtcaaggtgttggaccgcaatgacaacgaccccaagttcatgctaagtggc
tacagcttctctgttctggagaacatgcccccactcagcgccgttggcatggtgactgtg
ctggacatggatcagggagagaacgccagagtgcagctctctgtggagccagacggaggg
aagtttgtgattcagaatggaacaggaaccatcctgtccagcatctcctttgaccgggag
aaagagagcagctacaccttccgtctgaaggccgtagacgggggagagcctcccaggtcc
tcatatgtaggtgttaccatcaatgtcctggatgaaaacgacaatgatcctgtggtcacc
aagccctccaactcctccttcagactcctgtcccctctagctgccccagaaagccgtgtg
gagctagtggaggctgaagacctggacactgggcccaacgcagaaatggtcttcagcatc
actggaggaaacccttatgaactcttcagcatctcctccactactggggaaatcaccctg
gccaaggagctgacccggaaacatggtgggctccatcgcctggtggtgagggtgagtgat
gcgggcaaacccgcacgccacgccactgccatggtgcacatctacgtcaatgagaccatt
gctaatgtcagcctggtggaagcacttgtgggacacagtctctacacccctctggagaca
gacattgctggtgaccctgactacggcctggcagcccagcgcagtaacattgtgtacgga
agtctggcgggagtggcgggcgttgtcatggtgatcatagtggtggtgtttatccgccac
cgcattcagcgggagacgaagagcggctaccaggctggcaagaaggagaccaaggacctt
tacgcccccaagcaggggccaaagaatggaaaaggcaagaggggcaggaaaggaaagccc
tccaagtcccccaagcccttgggagaggaggaggaggtcagtctccagaagagtctaaag
ttcaacctggatggggtcaacgacagccccaggatccacctgcccctgacatacccccca
ggcagccctgaccttggcagacactaccgctccaactctcccctaccatcgatccagctg
caggcccagtctccctcggcctcccagaagcaccaggcagtccaggacctccctgctacc
aacaccttcgtagggactggaggagacgacaattcaacaggctcagaccagtactcggat
tatagctacaaggccagccagccaaagtacaacagcaagcagctcccccatcgcagagtg
acattctccacagccaatccggtgcaggatgcatctcagcacagttactatgacagtggc
ctggaggaatctgagacgcccagcagtaagtcatcatcaggcccccgcatcgggccactg
accctgcctgaggaccactacgagaggaccaccccggatggcagcatcggggaaatggag
caccctgaaaacgatatgcgatccattcctgatgtggccatgacggggaactgtactcaa
gagtgcagcgagctgggccactcagacgcctgctggatgcctgggcagccctccccagtg
cgcaagaccagaaacccccccaaactctccaccttcgtgccttaccaggagagaggcagc
ctgggccgcttggccaatgggagcgccaggctgggtggagaggagcaccgagcccacctt
ccaccctcccggagtgcctattccaacagcggtcacgccccaagtcaggactttcccctg
gaggaggtgcccatgagcgtggccaccgagttcccttccacctcccctcctagccacacc
cccaaacgagagatctacctgtga
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