Salmo salar (Atlantic salmon): 106603740
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Entry
106603740 CDS
T04363
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04270
Vascular smooth muscle contraction
sasa04625
C-type lectin receptor signaling pathway
sasa04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
106603740
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
106603740
09153 Circulatory system
04270 Vascular smooth muscle contraction
106603740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106603740
Membrane trafficking [BR:
sasa04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
106603740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PH_13
PDZ
PDZ_6
SOS1_NGEF_PH
P1_N
Motif
Other DBs
NCBI-GeneID:
106603740
NCBI-ProteinID:
XP_014053265
UniProt:
A0A1S3RLS7
LinkDB
All DBs
Position
ssa04:63490488..63595347
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AA seq
1439 aa
AA seq
DB search
MRAGVQTGDRIIKVNGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLAQISLSEGEGGD
LSSFLSSPHSPGPTGGTGERCVTSSTSPQDHITSPLPIWEENNALHSQKVDILQKMLTKE
QEDLQAMKEVYSRNPTAKLLKDIQEAKKHIPLLQSQLSKATGTPQDGSLSPMDGEVEEGG
IEAADGEQTPFSRGESGSDGPWTNNAVSPSPLPENPCQRETPCHSPKTTPRESLNSCPSP
DTEDTADLNCNFQSSVGSPFSRLNPQIIGAEDDYFDTEQEQINGQCSCFQSIELLKSRPA
HLAAFLHHVVSQFDPAPLLCYLYADLYKQTNSKETRRIFMDFHTFFMDRAANLKVAVPES
MASELERRRPELIPEEVHRPYIQLLQDTLLPDIQRNLEDFRQKRSMGLTLAEGELAKLDT
ERVRDRVSLERERSCAEHIISKIEDVLLTSQPTEEEKCTTMQYVILTYMKHLGVKVKEPR
SLEPKRVRINFLPKIKKSTKTEKEGEEKVKKPRFPSILGPPRRPSRVDSASISKAMELNK
HRGPQKQLSQPALSVFEHPEFSAGGIRARSQFSDPGSDAATHPLAYIASPPHSAPASQGS
DLTGRDSDLGLTPSALPRLSTDGLHSGDTLDGMVHLTSTHFDFSPCTLDQLQEEERESDR
AQEGGTPKPARRMDGLGCGDVPSEDDQGNEIECEQDPPNWQALVSREVLAGLTPQEIKRQ
EVINELFYTERAHLRMLKVLDNVFCQKLTRDSILPPGDIKHIFTNLEEIVQLHVWITEQM
SVIRKKNETSVIDLIGDDLLAWFSDDEEEKIKRAVGTFCSNQPFALELIKTRQKKDQRFT
SFMQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLESIAKYTEDAEERDKVKRAGECCRT
ILNYVNQTVKEAENKQRLEDYQRRLDLSSLKQSENPMISEFKSLDLTKKKMVHEGPLSWK
VNKDKTIELYTLLLEDILVLLQKQDERLVLKCHSKNLAGTADTKHIFSPIINLNTVLVRS
VATDNKSFFVLSMSDNGAQIYELMAQTVSEQRTWQCLITQSAETMKTKTHIPLLQTDVER
DAVEIISTGMPKLNKDPERTSMGCTQSPEKDVISLPGLQPTPTSTNPFDGVKSDDEEEED
SPLPDRREEQEEEEEVEEVDEEEVEAFLDGELADRLPFLQERTRRGIAIDEEEPDDAFGM
PPSRAEEALRTLAALRQVLLNHMTSRAEGSDKDKEKGKEKEQRKGRAPGGRLLRTTSLRG
PEDNNSTSAPSSVAAPSTGSSENGASEKTEAGGEEGSPGSNELPSRTTGYFETSEDYGEP
TGTFKAEKRQGIHPLGSYMVLEDYGASGESSTDNDGQAGGEGGGGGGAQWGPDIDLKKLL
SSSSQTGGAGPNLSRQVMTHIRLLQANLQHLKEVETKYNELRQRLTETATDTEENKDNS
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcgggtgtccagacgggtgataggatcatcaaggttaacgggaccttagtaaca
cattcaaaccatgtagaagtcgtcaagctaataaaatcgggctcctatgtggccctcaca
gtgctggggaggcccccggggctggcccagatctcgctgtcggagggcgaggggggagac
ctgtcctctttcctctcctcgccccactctcctggaccaacggggggaacaggggagcgc
tgcgtcacctcctccaccagcccccaggaccacatcacctccccgctgcccatctgggag
gagaataacgcccttcacagccagaaggtggacatcttacagaagatgctgaccaaggag
caggaggatttacaggctatgaaggaggtgtacagcaggaaccccacagcgaaactactg
aaggacatccaggaggccaagaaacacattcctctgctgcagagccagctcagcaaggcc
acaggcacacctcaggatggctccctctcccccatggacggtgaggtggaggaggggggc
attgaggcagccgatggagagcagacccccttctcgcggggagaaagcggcagcgacggg
ccctggaccaataacgctgtgtctcccagtcccctccctgagaatccgtgccaaagagag
acgccctgccacagcccaaagaccactccccgagagagcctcaactcctgcccctcccct
gacacagaggacacggcggacctgaactgtaacttccagtccagtgtgggcagccccttc
tcccgtctcaacccccagataatcggagcagaggacgactactttgacacagagcaggaa
cagatcaacggtcagtgtagttgttttcagagtatagagctgctcaagtctcggcctgct
cacttggccgccttcctccatcacgtggtctctcagtttgaccctgcacctctgctgtgc
tacctttacgctgacctgtacaagcagaccaactccaaagagaccagacggatcttcatg
gatttccatactttctttatggaccgagcagcaaatctgaaagtagctgtgcctgagtct
atggcctctgaactagagcggcggagacctgagctgatcccagaggaagtgcacagacct
tacatacagctgctacaggacacactgctaccagacatccagaggaacctagaggacttc
aggcagaagcgcagcatgggtctgaccctggcagaaggggagctggctaagctggacaca
gagagggtgagagaccgcgtgtcgctggagagagaacgctcctgtgccgaacacatcatc
tccaagatagaggacgttctgcttacgtcacagcccacagaagaggagaagtgcactact
atgcagtatgtcatcctcacctatatgaaacacctgggggtgaaagtaaaggaaccacgt
agcctagagcccaaacgagtccgcatcaacttcctgcccaagatcaagaagagcaccaag
actgagaaagagggggaggagaaggtgaagaagcctcgctttcccagcatcctcggccct
cctcggcggcccagccgcgtggactcagcttcaatcagtaaggccatggagttgaacaag
catcggggcccccagaaacagctctcccagcccgccctcagcgtcttcgagcacccagaa
ttctcggcaggcggcatccgtgcccgcagccaattcagcgatccaggctctgacgcggcc
acccaccccttggcctacatcgcatcccccccccacagtgccccagccagccagggctcc
gacctgacgggacgcgactctgacttgggactcactccctctgccctgcccagactgagc
accgacgggctccactcgggcgacaccctggacgggatggtccacctaaccagcacccac
tttgacttcagcccctgcaccctggaccaattacaggaggaggagcgtgaaagtgacagg
gctcaagagggaggaacgcccaaaccagcccggaggatggacgggttaggctgtggggat
gtgccgagtgaggacgaccaggggaacgagatcgagtgcgagcaggaccctcccaactgg
caagcgctggttagccgagaggtcctggcgggcctgacgccacaggagatcaaaagacag
gaagtcatcaacgagctcttctacacagagcgagcacacctgaggatgttgaaggtgctg
gataacgtgttctgccagaaactaacccgagacagcatcctgcctcctggagacattaaa
cacatcttcactaacctagaggagattgtccagctacacgtgtggataacggaacagatg
tcggtcattcggaagaagaacgagacgtcagtgatagacctgataggagatgatctacta
gcttggtttagtgatgacgaggaggagaagatcaagcgggcggtgggtaccttctgcagt
aaccagccctttgccctggaactcatcaagacccggcagaagaaagaccagcgcttcacc
tccttcatgcaggaggctgagagcaaccgtctgtgtcgcaggctgcagctgaaggatatc
attccagtggagatgcagaggctgaccaagtatccactactgctggagagcatagccaag
tacacagaggatgcagaggagagggacaaagtgaagagggccggggagtgctgcaggacg
atcctcaactatgtcaaccagacagtgaaagaggcagagaacaaacagaggttagaggac
taccagagacgcctggacctgtcctcactcaaacagagtgagaacccaatgatctcagag
ttcaagagtctagacctgaccaagaagaagatggtgcacgagggacctctctcctggaag
gtcaacaaagacaagaccatcgagctgtacacgctgctcctggaggacatcctggtgctg
ctgcagaagcaggacgagcggttggtcctcaagtgccacagcaagaacttggcgggcacc
gccgacaccaagcacatcttcagccccatcatcaacctcaacaccgtgctggtgcgctcg
gtagccaccgacaacaagtccttctttgtgctgtctatgtccgacaacggagcccagatc
tacgagctgatggcccagaccgtgtccgagcaaagaacgtggcagtgtctgataacgcag
agcgcagaaaccatgaagacgaaaacacacatacctttacttcagaccgatgtggagcga
gacgcagtggagattatcagcacggggatgcccaaactgaacaaagaccctgagcgcacc
tccatgggatgtacccagtccccagaaaaagacgtaatttccttgccgggtctgcaaccc
acacccacatcgaccaacccatttgacggcgtcaaatcagacgacgaggaagaagaggac
tcgccactgccagacagaagagaagaacaagaagaggaggaggaagtggaggaggtagat
gaggaggaagttgaagcgtttctggatggagagctggcagacagactgcccttcctccag
gagaggacacgccggggcatcgccatcgacgaggaggagcccgatgacgcctttggcatg
cccccctccagagccgaggaggccctaagaaccttggcagccctgaggcaggtccttctc
aaccacatgacgagcagagcagagggcagcgacaaggacaaagagaaggggaaagaaaag
gagcagaggaagggccgagcccctgggggccgcctgctgaggaccacgtccctgaggggc
cccgaggacaacaacagtacctcggccccaagcagcgtagcagcaccctctactggctct
tcggagaacggcgcctcggagaagaccgaggcaggaggggaggaggggtccccggggtcc
aatgaactcccgtctaggacaacaggttactttgagacttccgaggactacggtgagcca
actgggacattcaaggcagaaaagcggcaggggattcaccccttaggcagttacatggtc
ctggaggactacggggcctcgggggagagcagcacggacaatgacggtcaggcgggtggc
gagggcggcggggggggtggggcccaatggggcccggacatcgacctgaagaagctgctc
tcctcatcctcgcagacagggggtgctggccccaacctcagccgccaggtcatgacccac
atccgcctgctccaggccaacctgcagcacctgaaggaagtggagaccaagtataatgaa
ctgcgccaaaggctgactgaaacagctactgacacagaggagaacaaagataatagttag
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