Salmo salar (Atlantic salmon): 106604166
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Entry
106604166 CDS
T04363
Name
(RefSeq) protocadherin-11 X-linked-like
KO
K16498
protocadherin delta 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
106604166
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sasa01009
]
106604166
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sasa04515
]
106604166
Protein phosphatases and associated proteins [BR:
sasa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106604166
Cell adhesion molecules [BR:
sasa04515
]
Cadherins
Protocadherins
106604166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RibLong
Fibulin_C
TMEM154
DUF6249
DUF6377
Motif
Other DBs
NCBI-GeneID:
106604166
NCBI-ProteinID:
XP_014054060
UniProt:
A0A1S3RP09
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All DBs
Position
ssa05:complement(5189270..5434499)
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AA seq
1255 aa
AA seq
DB search
MDLAGQAHVLVVLLTCLVFLSWAQEKDYTVREEQPENVRIGNLRKDLDLNLDPDFKLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTAHRIDREKLCSGVFNEKRCFYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDRWPQLIVQQSLDREQKDTFVMKIKVEDGGTPPKSSTAILQVTIS
DVNDNRPVFKDSEVEVNIPENAPMGTSVTQLHATDADLGSNAQIHFSFSNQISSSTKRHF
SIDSTTGLITVKQPLDREATPVHKLIVLASDGSSTPSRATVIVNVTDINDNVPSIDTRYI
MNLVNGTVLLSENAPLNTKIALITVTDKDSDLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDSGKPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQEKYSFTV
MARDNGSASLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDSDAG
DNSVITLSILNGKDNFLIDPQTGVIKPNLTFDREQQSSYTFMVKAIDGGQPPSTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVQSTTSPGSVVTRVFAIDNDTGMNAELQYSIIGGSP
RGLFAIDKTTGNITLQEKIVSADQGLHRLVVKVKDLGQPESLHAIALIHLFINETVSNAT
FIQEQLRKSLETPLDRNVGDSEVTSQANGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKGKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVSIEESKPDDPSQEHING
TLDLPVELDEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPMAPNKHHV
IQELPLDNTFVVGCDSHSKCSSTSSDPYSVSECSCQGGFKTSGQIHTRQNQGQTPEKSFS
SVASTCPHKEGCLLSKITSANTQRRVTFHLPDGSQESCSDSGLGDHEPSSTASTTQPLPL
GFPREEYYQQTSPNSRTEGDGNSDPESTIVEVNLAKALAEASETCTQECLILGHSDSCWM
PPSLVTQFQSPSNTGTLPTLPSFGFQHQQSSPWARGAKADGRQCHTLGRSVPKDDLAKGM
NRPQFYNTLERHCSSKSKESDPIKVIPLASFSSSSSGQQTPANGGSSAFLHEHQL
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaggtcaggctcatgtgctggtggtgttactcacctgcctggtcttcctg
tcctgggcccaagagaaggactacacggtgagggaggagcagcccgagaatgtccgcatc
gggaacctgcggaaggacttggacctgaaccttgaccctgacttcaagctgtcctcacca
ctgcagttcaagcccgtctacaaaacgggcgatgtgcctttggtgagggtagaggccaac
actggggagatcttcaccacggctcatcgcatcgaccgagagaagctctgctcaggagta
ttcaacgagaagcgctgcttctacgagattgaagtagccgttctgcctgacgagatcttc
cgtctggttaagatccggttcctgattgaggacatcaatgacaacgctccactcttccag
tccaccgtaataaacatctccatcccagagaacactgccatcaacacccggtaccccgtg
ccctctgcatttgacccagatgtggggatcaatgggatccaacactatgaacttgtcaag
agtgtaagtgagtttggcctagacatcatcgagaccccagagggagacagatggccccag
ctgatcgtccagcagagcctggaccgcgagcagaaggacaccttcgtcatgaagatcaag
gtggaggacggtggaacgccacccaagtccagcacagccatcctccaggtcaccatctcc
gacgtcaacgacaatcggccagtcttcaaggacagtgaggtggaggtgaacatccctgag
aacgcccccatgggaacctccgtcacccagctccacgccacggacgcagacctcggctcc
aatgcccagatccacttctccttctccaaccagatctcctcatccaccaagaggcatttt
tccatagacagcaccaccgggctgatcactgtcaagcagcccttagaccgagaagccact
ccggtccacaaactcattgtcctggccagcgacggcagctccaccccctccagagctacg
gttatcgtcaacgtaacggacattaatgacaacgttccgtccatagacactcggtatata
atgaaccttgtaaatggtacggttctactgtcagagaacgctcctctcaacacaaaaata
gccctaattacagtgacggacaaggactcggatctgaacggcaaagtgacttgttacact
gatcatgacgttcctttcaggttaaagccagtctttaatgaccagttcctgctggagact
gcggcccccttagattacgaaacaaccagggaatatgcaattaagatagtagcgtcggat
tcagggaagcctcctttgaacacttcagcgatggttttaataaaaattaaagacgagaat
gacaacgctcccatcttccctcagcctgagattcagctgtccataccagagaacaacgat
ccgtccacgcagctcataaagatcagcgccacggatgcagacagcggacataatgcagag
attatttattctcttggccctgacgctcctgatgggtttaacatagatagacggtcagga
atcctctccgttggcaaacgcctggatagagagaagcaggagaagtattcattcactgtc
atggcgagggacaatgggtctgcttcgctgcagagcaatgtcacagtgaggttaatagtg
caggacctcaacgacaacagcccagctttcacccatcctgagtataacttctacgtgcct
gagaacctgcctctgtacgggaccgtgggtctgatcaccgtcacagattctgacgcaggt
gacaactctgtcataacactgtccatcctgaacgggaaagacaatttccttattgatccc
cagaccggtgtaatcaaacccaacctcacgtttgatagagagcagcagagctcatacact
tttatggtgaaggctatagacggagggcaaccacccagcacttcatacgccaaggtcacc
ataaacgttgtggatgtcaatgacaatcgacccgtttttgttatcccctcgtccaactac
tcttacgatctggtccagtctaccaccagccctgggtctgtggtcaccagggtgttcgct
atagacaatgacactggcatgaatgctgagctgcagtacagcatcattgggggatcacca
agagggctgtttgccatagacaaaacaactggtaatataactctgcaggagaagatagtc
tcagccgatcagggtttacacaggctggtggtgaaagtcaaagacctgggccagccagag
tccttacacgcaatcgccctcattcacctgtttattaacgagactgtatccaacgctaca
ttcattcaagagcagctacgtaagagcttggagactccattggaccgtaacgtgggagac
agtgaggtcacatcccaagccaacggatacgtgattgttgtcatcgctataatagctggg
actatgacagtgatcttagtcatcttcgtgacagccttagtgcgctgtcgtcagacgccc
aggcacaaagtggtgcagaagggcaagcagagtggcgagtgggtgtcgcccaaccaggag
aaccgtcaaatcaagaagaaaaagaagaaaaagaagagatcccctaagagcctcctcttg
aactttgtcagcatagaagaatccaagcctgatgatcccagccaggaacacattaatgga
accctggacctgcctgtggagctagatgagcagaccatggggaaatacaactgggccact
acgccgaccaccttcaaacctgacagtccagacttagccaagcattacaagtctgcctcc
ccccagccaaccttccaaatcaaaccagagaccccgatggcgccaaataaacaccacgtg
attcaggagctcccgctagacaacacgtttgtggtgggctgtgactcgcactccaagtgc
tcctccaccagctcagacccgtactcggtctcagagtgcagctgtcaggggggattcaag
acttctgggcaaatccacaccagacagaatcagggccagacaccagagaagtccttcagc
tcagtcgcatctacttgtccccataaggagggttgtcttctcagcaagataacatctgca
aacacccagcgtcgcgtgacgttccacctcccggacggttctcaggagagctgtagcgac
agtggtctaggggaccacgagcccagcagcactgccagcaccactcagcctctccccctc
ggcttcccccgggaagagtactaccaacagacctcgcccaacagccgcaccgagggagac
ggaaactctgaccctgagtccaccatagtggaggtgaacctggccaaggccctggcggaa
gcctcggagacgtgcacccaggaatgtctgatcctgggccactccgacagctgctggatg
cccccctccctggtgacccagttccagtctccgtccaacacaggtaccctgcctaccctg
ccctcctttggcttccagcaccagcagagctccccatgggccagaggagccaaggcggat
ggacgtcagtgccataccctgggcaggtctgtgcccaaagacgatctggctaaagggatg
aaccggccgcagttctacaacactctggaaagacactgcagcagcaagagtaaggagtct
gaccccatcaaggtcatccctctggccagcttttcctcatcttcgtcaggccagcagacc
ccagccaacggaggatcctctgccttcttacatgagcatcagctgtaa
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