Salmo salar (Atlantic salmon): 106604636
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Entry
106604636 CDS
T04363
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa02010
ABC transporters
sasa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
106604636
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106604636
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sasa02000
]
106604636
Transporters [BR:
sasa02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
106604636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
106604636
NCBI-ProteinID:
XP_014054950
UniProt:
A0A1S3RRK1
LinkDB
All DBs
Position
ssa05:29507071..29548600
Genome browser
AA seq
2364 aa
AA seq
DB search
MILLLCVQVTHAWITSQDKNISKSSEEVWFSLGGNTLDAERGLISCLWEKFRAGGKLEWK
RSRVEMSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECH
FPNKAMPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLY
SQNDRNLDGFKGLIQALKTLQANTKGFKLKDFLHNNETLSTFLLRNASFSEHAVRQITEA
DVNLEKVLVKGFGVHLRDLCSSNGTRVEDFVTITDSKVSSLVQKMLCVSPGSWLNQAESH
FLHNLDFLKPIRKDVRADPEAVQQVAKATDKLLESLGSLALELASMKSWRDLRNEIIFLT
ENATSSPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNTTNGEEPISAYD
NTSTPYCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFHELGV
LRELGGMWEEIKPKVWTFMESSEHMDLVRTLLKNNGTGSFFTSQLAGSEWTVEDVSNFLT
KYSQDTHPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDD
RKFWAGIVFPDIEANSSELPANVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYI
WGGFSYLQDIIEHSIITAVTGVKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWM
YSVAIIIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVVLLKMGNL
LPYSDPGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQD
YVGFGAKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMY
FDSFLYMVMTWYIESVFPGQYGIPRPWYFLFSKSYWFGEGDNRKTDFSQNKKKSCEAVCI
EEEPAHLKTGVFIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTG
LFPPTSGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQV
KSEIEQILIDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARR
GIWDLLLQYRLGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLT
LVKKGPEPFLSSCRNSSSTVSLTKKEEDCPSESSSDAGLGSEHESEVATIETAQAASICE
SAFVTPDVSLISSLIFKHVPAARMVENLGHELIYVLPYGAAKDGAFVELFKDMDNRLPDL
GISSYGVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPLRRRRRNHAFGGGNAFGGDHQSCL
RPQIDDDNNEHNDSDADPESRETDFLSGSDGKGSYKVKGWSLKRQQFVALIWKRFLYAQR
SRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDASTQ
RLLSALTEGPGFGTRCMEGQPIPDTPCTMGDEDWSIPEVPETLLELFRTGNWTMEEPSPA
CTCSCDGRKKMLPECPAGAGGLPPPQMKISETDTLQNLTNRNISDYLVKTYAEIIGKSLK
NKIWVNEFRYGGFSLGARSTNVLPPADEIDDAIARVRKIFELEKGAAADRFLASLSSFIN
GLDTKNNVKIWFNNKGWHSMGAFLNVMNNGILRANLPPGKDPSKFGIRAFNHPLNLTKEQ
LSQVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTAN
FIWDMCNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKI
PSTAYVVLTSVNILIGINGSISTFVMELFGDNEIGGINNILKNVLLIFPHFCLGRGLIDM
VKNQAMADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLFQYRFCIKPINLH
TKLPLVGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPVVDRLCVGIPPGECF
GLLGVNGAGKTTTFKMLTGDSMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLT
GREHLEFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGG
PPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF
RCLGSVQHLKNRFGDGYTIILRVAGADPDLPPVMKFIESELPGSTLKEKHRNMLQYQLPS
SLTSLAHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVV
DITPLSSRQAEDKLAEERLKESLV
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atgattctcctcctctgtgtacaggtcacacatgcctggataacaagccaggacaaaaat
atttcaaaaagtagtgaagaagtgtggtttagtttaggaggaaacacacttgatgctgaa
aggggtctgatttcgtgcctttgggaaaagtttagagctggagggaagcttgagtggaag
aggtccagagtagagatgtccatctcaactcagctgggcttgttgttgtggaagaacttt
acctacaggagaaggcaaacgctccaactgctgattgagatagtatggcccctgttgatc
ttcttcattttgatatcagtgagactgaactaccctccatatgaacaacatgaatgtcat
ttccccaacaaggccatgccctcggcaggcaccctgccctggatccaaggcatcatctgc
aacgccaacaacccctgcttccgcaaccccactcctggagagtcccccggggtcgtggga
aacttcaacgagtccataatctctcgtctgttctccgatgccaagaagatcttgctgtac
agtcagaatgaccggaatttggacggctttaaaggcctcatccaagccctgaagacacta
caggccaacaccaaaggattcaagctgaaggatttcctccacaacaatgagaccctgtcc
actttccttctgcgaaacgcttccttctcggaacacgccgtgcgccagatcactgaggcc
gacgtaaacttggaaaaggtgctggtcaaaggcttcggtgtccacctgagggacttgtgc
agcagcaacggcaccagagtagaggactttgtgaccatcacagacagcaaggtgtccagt
ctggtccagaagatgctctgtgtgtccccaggctcctggctcaaccaggcagaaagccac
ttcctccacaacctggacttcctcaaacccatacggaaagatgtgagggctgaccctgaa
gccgtccagcaggtggccaaggctacagacaaactcctggagagcctgggctccctggcc
ttggagctggccagcatgaagagttggagagacctgcgtaacgagatcatcttcctcact
gagaacgccacatcctcccccagccacatgtaccaggctgtgtcgcgcatcgtctgtggc
catcccgagggcggcggactaaagatcaagtccctcaactggtacgaggacaacaactac
aaggctctgttcggcaaccacaacacaaccaacggggaggagcccatctctgcctacgac
aacacatccactccatactgtaacgctatgatgaggaacatggagtccagccccgtgtcc
aggatgatctggcaggccctgaagcctctgctcatgggcaagatcctgtacacccccgac
acccccgccacacagaagatcatccacgaggtgaacagaacattccatgagctgggggtc
ctcagagagctggggggcatgtgggaggaaattaagcccaaggtctggaccttcatggag
agcagcgaacacatggacctagtaaggaccctactgaagaacaatggcactggcagcttc
ttcacctcccaactggcgggctcagagtggactgtggaggacgtctccaacttcctgacc
aaatattcgcaggacacgcatccccacggcaccgccttcacctggagggaagtcttcaac
gagacggaccaggccatcatgagcatatcccgcttcatggagtgtgtaaacctggataag
atggagcccgtggccaatgaggaaaggatggtcaacaaatccatggcgctcctggacgat
aggaagttctgggcggggattgtgtttccagatattgaggccaacagctctgaactgccg
gccaacgtcaactacaagatccgcatggacatcgataacgtggagcgcaccaacaagatc
aaagacggatattgggaccctggtcctcgtgctgacccatttgaggacctgcgctacatc
tggggtggcttctcttacctccaggacatcatcgagcatagcatcatcacagcagtaact
ggcgtcaaggagaagaccggagtctacatccaacagatgccctacccctgctacgtggac
gacatcttcctgcgggtgatgagtcgctccatgcccctcttcatgaccctggcctggatg
tactctgtggccatcatcatcaagagcgtggtgtacgagaaggaggcaaggctcaaggag
accatgaggatcatgggattggacaacggcatcctgtggtttagctggttcatcagcagc
ctcatccccctgctcatttctgccggcctgctggttgtactgctcaagatggggaacctg
ctgccctacagtgaccccggcgtcatcttcctgttcctgggttccttcgccgtggtaacc
atcatgcagtgcttcctcatcagcacaatgtttgcccgtgccaacctggcggcggcatgc
gggggcatcatctacttcaccctctacctgccctacgtcctctgtgtggcctggcaggac
tatgtgggctttggggccaaaatagtcgctagcctgctgtccccagtggcctttggcttt
ggctgtgagtactttgctctgtttgaagagcagggcatcggcatccagtggaacaatctg
ttcaatagccccatggaggaggacgacttcagcctgaccaccgccatcatcatgatgtac
ttcgactccttcctctacatggtgatgacctggtacatcgaatccgtcttccctggtcag
tatggtattcccaggccctggtacttcctcttctccaagtcctactggtttggagaagga
gacaacaggaagactgacttcagtcagaacaagaaaaagagctgtgaagctgtctgtata
gaggaagagccagcccacctgaaaactggtgtcttcatagagaacctagtcaaggtgtac
cggcacgggaagaagctggctgtggacgggctgactctgggcttctacgagggacagatc
acctctttcttgggccacaacggagcagggaaaaccaccaccatgtcgattctaacggga
ctgtttccccctacctctggcactgcttacatcatgggaaaagacatccgatcggagctg
agtgctattcgacagagtctgggcgtttgtccacagcacaacgttctcttcagcatgctg
accgttgaggagcacatctggttctatgctcgtctgaagggtctatctgaggaacaggtg
aagtctgagatcgaacagatcctgatagacactggcctgccgcacaaacgcacttccagg
accagcacactgtccggagggatgcagaggaagctctctgtggctttggcctttgtcggg
gggtcaaaggttgtgattctggacgagcccactgccggggtcgacccctacgcccgcagg
ggcatctgggacctcttgctccaatatcgtctaggtcgtaccatcatcctctccacccac
cacatggacgaggcggacatcttgggcgaccgcatcgccatcatctcccacggcaagctg
tgctgcgtgggctcctccctcttcctgaagaaccagctgggtactggctactacctcacc
ctggtcaagaagggcccagaacctttcctcagctcctgccgcaactcctccagtaccgtc
tccttaactaagaaggaggaggattgtccctctgagagcagctccgacgcaggccttggc
agcgaacacgagagcgaagtagctaccatagaaactgctcaggcagcttccatctgtgaa
agtgccttcgtgacccccgacgtctccctgatctccagcctgatcttcaagcacgtcccg
gccgcccgcatggtggaaaaccttggccacgagctcatctacgtcctaccctacggcgcc
gccaaggacggagccttcgtggagctcttcaaggacatggataatcgcctccctgacctg
ggcatatccagctatggcgtctccgacaccaccctggaagagattttcctgaaagtggca
gaggacaacggagttgacactgaagttccctcagacggtacactccccctgcgcagacgt
cgtagaaatcatgcctttggtggaggaaatgcctttggtggagaccaccagagctgcctt
agaccccagattgacgacgacaacaatgaacataacgactcggacgcagacccagaatcc
agagagacagacttcttgagcggctcggacggtaaaggctcttacaaggtgaagggatgg
agtctgaagaggcagcagtttgtggccttgatttggaagaggtttctgtacgctcaacgc
tccagaaaaggtttctttgctcagattgtactccctgctgtgtttgtgtgcattgccctg
gtcttcagtctcatcgtcccaccttttggaaagtaccccagtctggagctgcagccatgg
atgtacgaagaacagtccctcttcatcagcgatgacgcccctgaagacgctagcacacaa
cggttattgagtgccctcaccgaaggtcctgggtttggaacgcgctgcatggaaggacag
cccatacctgacactccctgtacgatgggtgacgaagactggtccataccggaggtcccg
gagacccttctggaactgttccgcacaggtaactggaccatggaggagccgtcccccgca
tgcacctgcagctgtgacggccgcaagaaaatgctccctgagtgtcctgctggagccgga
ggactgccacctcctcagatgaagatcagcgagacagacaccctgcaaaatctgaccaac
agaaacatctctgactatctggtgaagacctatgcagagatcattgggaaaagtttgaag
aacaaaatctgggtaaatgaatttaggtacggtggcttctcattgggtgccaggagcacc
aacgtcctccccccagctgacgaaattgacgacgccatcgctcgagtgaggaagattttt
gaattggagaagggtgcagccgcagaccgattcctggcgagcttgtctagcttcatcaat
ggtctggacaccaagaacaatgtcaagatttggttcaacaacaaggggtggcacagcatg
ggagccttcctcaacgtgatgaacaacggcatcctgcgtgccaacctgccccctggcaag
gaccccagcaagtttggcatccgcgccttcaaccacccgctcaacctcaccaaggagcag
ctgtcccaggtggcactgatgaccacctcagtggacgtcctggtgtccatctgcgtgatc
ttcgccatgtcctttgtcccagccagcttcgtagtcttcctcatccaggagagagtgagc
aaggccaagcacatgcagttcatcagcggcgtgcagcccctgctttactggactgccaac
ttcatctgggatatgtgtaactacatcgtcccggcgacgctcgtcatcatcatcttcgtc
tgcttccaacaaaaggcctatgtgtcgtccaccaacctgccagtgctggccctgctgctg
ctcctctatggctggtctatcactcccctgatgtacccggcatccttcttctttaagatc
cccagcacggcgtacgtggtgctgacctccgtcaacatcctcatcggcatcaacggcagc
atctccaccttcgtcatggagctcttcggagacaacgagattgggggtatcaacaacatc
ctgaagaacgttttgctgatcttccctcacttctgtcttggccgaggtctcatcgacatg
gtgaagaaccaggccatggccgacgctctggagagatttggtgagaaccgcttccgatcc
cctctggaatgggacatggtgggcaagaacctgtttgccatggccgtggaaggagtggtc
ttcttcatcatcaccgtccttttccagtaccgcttctgcatcaagcccattaacctgcac
accaagctccctctggtgggtgaggaggacgaggacgtggccagagagaggcagaggatc
gtcaatggactgggacacggagacatcctggagctccgacagctcaccaaagtctacaag
aggaagcaaaagccagttgtagaccgcctgtgtgtgggcatccctcctggagagtgcttt
ggcctcctgggtgtgaacggagctggaaagaccaccaccttcaaaatgctgacaggagac
tccatggtcaccagtggagaagctttcctggctggaaaaagtatactgcgggaaatagac
gaagtgcaccagaacatgggctactgtccccagtttgacgccatcaacgaactgctgacg
ggcagagagcacctggagttctacgccgtcctgcgtggagtgcccgagaaggaagtgtgc
gaggttgctgaatggggcatccgtaagctgggcctagtaaagtatgtggacaaggcagca
ggaagctacagcggaggaaacatgaggaaactctccacggccatggccctaataggagga
ccacccgtcgtgttcctggacgagcccactactgggatggaccccaaagcgcgccgggct
ttatggaactgcattcacagcgtcatcaaggagggacgctccgtggtgctcacctcgcac
agtatggaggaatgtgaggccctgtgcaccagaatggccatcatggtcaacggcagattc
cgttgcttggggagcgttcagcacctaaagaacaggttcggagacgggtacaccatcatc
ctgcgtgtggcgggggcggaccctgacctgccgccggtgatgaagttcattgagagcgag
ctgccgggcagcaccctgaaggagaagcacaggaacatgctgcagtaccagctgccctcc
tctctcacctccctggcacacatcttcagcatcctggccaagaacaaggacctgcttcgg
atagaagactactctgtgtcgcagaccacactggaccaggtgtttgtgaactttgccaag
gaccagagtgacgattaccactcaaaagacaattcagttaagcgcaaagaggcggtggtg
gacattaccccactcagctcgcggcaggctgaagataagctagctgaggagaggctaaag
gagagcttggtgtga
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integrated database retrieval system
