Salmo salar (Atlantic salmon): 106604661
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Entry
106604661 CDS
T04363
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106604661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106604661
Enzymes [BR:
sasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
106604661
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106604661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
TniB
ATP_bind_1
AAA_16
AAA_18
AAA_22
MMR_HSR1
CbiA
Motif
Other DBs
NCBI-GeneID:
106604661
NCBI-ProteinID:
XP_014055011
UniProt:
A0A1S3RRS7
LinkDB
All DBs
Position
ssa05:30240663..30246492
Genome browser
AA seq
444 aa
AA seq
DB search
MYAMVTEGPEKTGEEGVGAGGGGTRFDLEKETELRFEVEAGEKVHLELLTGLAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNAHTALEQMRRQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVELDVGQSGVSVPGTMSALCIE
RPADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSLRCEENRKASVGGCIIN
TCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVERS
KDCRRVSRDEKIREYFYGFRSVSFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTHHVLSVSCADEGEERAGGLRRGVLESPVCGFIVVTNVDTQAQVMTV
LSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtatgccatggtgactgagggcccagagaagactggtgaggagggagtgggggccggc
ggcggggggacgaggtttgacctggagaaggagaccgagctgcggtttgaggtggaggcc
ggggagaaggtgcatctggagctgctcacaggattggcagaggtcttcggctctgagctc
aaccgcaacaagaagtacacgtttggaccaggttccaagattgctgtgttcacctggcag
ggctgtagtgtttctctctcggggaagacagaggtggcatacatatcaaaggacacacct
atgctgctctacctgaatgcacacactgcactggaacagatgagacgacaggcggagaga
gacaacgagaggggaccacgggtaatggtggtggggcctacagatgtggggaagtcgacg
gtgtgcaggctgttgctgagctacgctgtcaggctgggcaggaggcccacactggtggag
ctggatgtgggccagagtggggtgtcagtcccgggcacaatgtcagcgctgtgtattgag
cgtccggctgacgtggaggaggggtactccgtacaggctccgctggtctaccactttggt
tccaccactccaggaaccaacatcaaactctacaacaagttgacgtcgtgtctagccgaa
gtgttctccctgcgctgtgaggaaaacaggaaggccagtgtgggcggctgcatcatcaac
acctgtggctgggtgaagggttctggctaccaggccctggtccactgtgcctcagccttc
caggtggatgtggttctggtgctggaccaggagaggctttacaacgagttgaagcgggac
ctaccgcacttcgtccgagtcgtgctgctacccaaatccggaggggtcgtggagcgctcc
aaagactgcaggcgtgtatctcgggacgagaagatccgggagtacttctacggttttcgc
agtgtctcgttcttccctcacgctttcgacgtgcgcttttctgatgtgcgcatctacaag
atcggagcgccttccatcccggactcatgcctgcctcttggcatgtcgcaggatgacacc
cagctgaagctagttcctgtgacgcccggtcgtgacctcacacaccacgtgctgagcgta
agctgtgccgatgagggggaggagagggctggagggttgcgcaggggtgtgctggagagc
ccggtgtgtgggttcattgtggtgactaacgtggacacacaggcacaggtgatgaccgtg
ctctcgcccgcccccagacccctccccagacacacactgctcatcatggacattcgcttc
atcgacctcaaatag
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