KEGG   Salmo salar (Atlantic salmon): 106604840
Entry
106604840         CDS       T04363                                 
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106604840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sasa03041]
    106604840
Spliceosome [BR:sasa03041]
 Complex B
  Other components
   Prp19-related factors
    106604840
 Complex C
    106604840
SSDB
Motif
Pfam: STL11_N zf-CCCH_RBM22 RRM_1 zf_CCCH_4 Torus RRM_occluded zf-CCCH_2 Nup35_RRM_2 zf-CCCH zf-CCCH_4 zf-CCCH_10 RRM_YTH1 zf-CCCH_12 RRM_3 zf-CCCH_PARP12
Other DBs
NCBI-GeneID: 106604840
NCBI-ProteinID: XP_014055367
UniProt: A0A1S3RU53
LinkDB
Position
ssa05:37127633..37155270
AA seq 421 aa
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMSKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLDIKDDVPKSDVNKEYYTQN
AEREIGNSDGTRPVGLLGKAPSSSEMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKTITTLYVGGMG
DTISDAELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIINGRRLTV
KWGRSQAARGKEAFQDGVSEMGTRLDPVPGLPGALPPPPALEEDASTNYFNLDPGASPNV
MNISLPPPPGINPPPPGFGAPMFHMGSMGPPPPMGMRPPGHIHYPSQDPQRMGAHAARHG
D
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggcgacgtccctaggagctaacacatacaacagacagaattgggaagacgcggatttc
ccaattctgtgtcagacatgtttgggggaaaatccatatatccgaatgagcaaagagaag
tatgggaaagaatgcaagatctgtgctcgtcctttcactgtgttccgctggtgtccagga
acaaggatgcgcttcaagaaaacagaggtgtgtcagacctgcagcaagatgaagaacgtc
tgtcagacctgtctgcttgacctggagtacggtttgccaatccaggtcagagacaccggg
ctggacatcaaggatgacgtgccaaagtcagacgtgaacaaggagtactacacacagaac
gctgagagagagatagggaactcggatgggacacggccagtgggtctgctgggtaaggcc
cccagctccagtgagatgctgctgaagctggcccgtactacaccctactacaagaggaac
agaccccacatctgctccttctgggtgaagggagagtgcaagagaggagaggagtgtcct
tataggcacgagaagcccacagacccagacgatcccctggcagaccagaacattaaggac
cgttactatggtatcaatgaccctgtggctgacaagctgctgaaacgggcttccaccatg
cctagactggacacgcctgaggacaagaccatcaccacactctatgtaggggggatggga
gataccatctcagacgcagagctgaggaatcatttctatcagtttggggagatccggacc
accaccattgtccagaggcagcagtgtgccttcatccagtttgccacacggcaggcagct
gagcttgctgcagagaagtccttcaacaagctcatcatcaacggacgcaggctcaccgtc
aagtggggcaggtctcaggcagccagagggaaggaggccttccaggatggggtcagtgag
atgggaaccagattagaccctgtgccaggactgcctggagctctccccccaccccctgct
ctggaagaagacgcttccactaactacttcaatctggaccctggtgcatctcctaatgtc
atgaacatctctctgcccccgccgcccggcatcaacccaccacctccaggttttggcgct
cctatgttccacatgggttcgatgggtccccctcctcccatgggcatgagacccccagga
cacatccactacccgtcccaggacccccagcgcatgggtgcccatgctgcccgccatggc
gactag

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