Salmo salar (Atlantic salmon): 106604914
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Entry
106604914 CDS
T04363
Name
(RefSeq) collagen alpha-1(XXIII) chain-like
KO
K24355
collagen type XXIII alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106604914
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106604914
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106604914
NCBI-ProteinID:
XP_014055515
UniProt:
A0A1S3RUJ4
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Position
ssa05:39060984..39289487
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AA seq
646 aa
AA seq
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MDSTEDNGESKAALRPCAPRSLLLRCVVGFPTVVCFMLSLSSIAICLLMSFKTYQLENRL
DALELEKNTVFNPPESAFTREDGTVLPALRSSIETLLQERLSEVMPKLRTARDVPQECSC
PPGPPGKRGRMGRRGDPGAPGKTGRDGYPGPLGMDGKPGLPGPKGSQGPVGLKGDKGDQG
DIGPRMVFPRYDHGFMSGDQSNFQRRLMKGDQGSPGPRGPPGNTGKDGPRGPAGEQGFPG
HDGVEGKAGVPGKPGEDGEPGYPGPQGPPGSKGEAGLLGEKGERGMDGLPGFKGDKGDIG
EQGTQGDLGYPGEKGVPGSTEVIDFNGKLLEAFQAIQTISVGGPPGLPGPPGPPGGKGEL
GLPGTSGLDGEKGPKGDMGEMGSIGEKGEKGEMGLSGPGGMDGQKGDKGDSRLEDNLVQM
ISQPGPPGPPGPPGPTGYMGHHGTPGPKGEPGDKSKGEKGDIGPAGLRGIDGPQGPPGST
GLVGLPGTKGEKGKSGEPGMDGFPGLIGEKGDRGERGDKGDRGTVGKRGLKGGKGEQGPP
GLDQPCPVGSSGTKGLSDEEGKSAPPPLPPSGPEASCPLGQDGLPIPGCWHKEEKEEEKR
RQKLKRKRLALSQTRGESRPGGQREDAGETDSHGSQEDRQPLLRES
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggattcaacagaggataacggggagagcaaggcagcactccgtccatgcgcacccagg
tctcttctcctgcgctgtgtggtcggtttccctaccgtggtgtgtttcatgttgtccctg
agctccatagccatctgcctgctcatgagcttcaagacttaccaactggagaaccgactg
gatgcgctggagttggagaaaaacacagtgtttaaccctccggagagcgccttcacgcgc
gaggatgggactgtactaccggcactaaggagttctatcgagacgctcctgcaagagaga
ctgagtgaagtgatgcccaaactgcgcacggcaagggacgtccctcaagagtgttcctgc
ccaccaggtcctcctggaaagcgtggaaggatgggaagaagaggtgatcccggagctcca
ggcaagactgggagagatggatacccgggcccgctcggcatggatggcaaaccaggtctt
ccaggtcctaaaggaagtcagggaccagtgggactcaagggagataagggtgaccaggga
gacattgggcccaggatggtctttccccgctatgaccacggctttatgtctggtgaccag
tccaactttcagagacgcttgatgaagggtgaccaagggtccccgggccccagaggccct
cctgggaacacaggcaaggacgggccccgcggccccgctggagaacagggtttccctggt
cacgatggtgtggagggaaaagcaggtgtacctggaaagccgggtgaagatggcgagcca
ggatacccagggccacagggacccccagggtcaaagggggaggctggtttgctgggagag
aagggtgagaggggcatggacggactcccagggtttaagggagacaaaggagatatcgga
gagcaaggcacccagggagacttgggttatcctggtgaaaagggggttcctggctctact
gaggtcattgacttcaatgggaagctactagaagccttccaggccatccagaccatcagt
gtcgggggcccaccaggtttaccggggcctccaggacccccaggaggaaagggagagcta
ggcttgcctgggacgtctgggctggatggggagaagggtccgaagggcgatatgggggag
atggggtcgatcggagagaaaggagagaaaggagagatgggtctctctgggccagggggg
atggatggacagaagggggacaagggagactccaggctggaagataacctggttcagatg
atttctcagccgggccctcccggccccccaggaccccctggacctacagggtacatgggt
catcatggaacgcctggccctaagggagagcctggagacaaatctaaaggggagaaggga
gacattggacctgctggactgaggggtattgatggccctcagggtccccccggctccaca
ggattggtgggtctcccaggcaccaaaggagagaagggcaagtctggggagcctggaatg
gatggtttcccaggcctgattggagagaagggagaccggggagaaagaggagacaagggt
gaccgggggacggtggggaagagaggtctgaagggcggtaagggggagcagggtcctcct
ggactggaccagccctgtcctgtgggttctagtgggactaaaggactttctgatgaggag
ggaaagtccgctcctcctcctcttcctccttctggccccgaggcctcctgtcctttgggg
caggatggactgcccataccaggatgttggcacaaggaggagaaggaggaggagaagagg
agacagaagctcaaacgcaagcgtctcgctctctctcagaccagaggggagagcaggccc
ggaggacagagggaagacgcgggagagacagacagtcatgggagccaagaggacagacaa
cctctattgagagagtcatga
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