Salmo salar (Atlantic salmon): 106605222
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Entry
106605222 CDS
T04363
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106605222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106605222
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106605222
Spliceosome [BR:
sasa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106605222
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
Cas3-like_C_2
AAA_19
AAA_30
nSTAND3
SRP54
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
106605222
NCBI-ProteinID:
XP_014056108
LinkDB
All DBs
Position
ssa05:54170611..54192328
Genome browser
AA seq
1052 aa
AA seq
DB search
MANLEQWVSDSLHDILGLSDRYVAQFMIGSARKSSSAQDFVAHLKSTGTIDINQRVIAFA
QELYEKIPRKQVVEKPARAIERRVMEIEKKNRNYTLLSDSESDGEAVREREKKKSKGRGD
KRKHLRKREESQSSSEEETPKSIKLGHGDQKSSMKDEEEEEEEWEKEERERVLDLEERDA
FAERMKLKDKDKTRNIMERTDKKGYEEAQKRLKMAEEDHKKILPELRKESRRNYLSKREA
EKLEDLEAEIADEEYLFSTDALTERERKELEYKRNLRDLAKDYKKAGAKEKEERKNRYYM
PEEKRSKDIPQREMELELEMPMEGGGEQGRWEEERLKTASLSFGAKKEREKGLKAEREKY
QLILEEDEMINFVSSAVIMKGTQDEKEQEQAALSQAEVQKQSIQEVRRSLPVFPYREDLL
LAIQQHQILVIEGETGSGKTTQIPQFLMESGYNDGGMKIGCTQPRRVAAMSVAARVAQEV
GVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLHT
DILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEA
DYLEACVVSVLQIHVTQPPGDCLVFLTGQEEIETCCELLQERCRRLGSKISELLVLPIYA
NLPSDMQAKIFSPTPPGSRKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESL
IVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLLKS
LGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMIL
ASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHMVLLNVYTQWL
ESGYSTQWCYENFIQFRSMKRARDVREQLEGLMDRIEVEVCSSGGDIVPIRKAVTAGYFY
HTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSWLL
EVAPHYYKNKELEDSSSKKMPRKQGKAKEELG
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctagagcaatgggtgagcgacagtctgcacgacatcctcggccttagtgac
agatatgtcgcccagttcatgatcggctccgcgcgtaaatcctcgagcgctcaagacttt
gtggcccacctcaagtcgacgggcaccatcgacattaatcagagagtgatcgcctttgca
caggaactgtatgaaaagattcctcgtaaacaagtggttgaaaagccagccagagcgata
gagcgacgtgtcatggagattgagaagaagaatcgaaattacaccctactgtcggacagc
gagagtgacggagaggcggtgagagagagggagaagaagaaaagtaaaggccgaggcgat
aagaggaagcacctcaggaaaagggaggagagtcaatcatctagtgaagaggagacccct
aaaagtattaagctgggccatggcgaccagaagtccagtatgaaggatgaagaggaggag
gaggaggagtgggagaaggaagagagagaacgcgtactggatctggaagagagggatgcc
tttgccgaacgaatgaaactgaaggacaaagacaagacgaggaacatcatggagagaacg
gacaagaagggctacgaggaggctcagaaaagactaaagatggcagaggaggatcacaag
aaaatccttccagagttgagaaaggagtctcgcaggaactacctgtccaagagagaggct
gagaagctggaggacctggaggcggagatagccgacgaggagtacctgttctccacggac
gcgctgacggagagggagcggaaggagctggagtacaagcgcaacctcagagacctggcc
aaggactacaagaaagccggcgccaaggagaaggaggagaggaagaacagatactacatg
ccggaggagaagaggagtaaagatattcctcagagggagatggagctggagttggagatg
cccatggagggtggaggagagcagggtcgctgggaggaggagaggttgaagaccgcctcg
ctcagcttcggggccaagaaggagagggagaaagggttgaaggcagaaagagagaagtac
cagctgatcctggaggaggacgagatgatcaactttgtcagcagtgccgtcatcatgaag
ggaacccaggatgagaaggagcaggagcaggcagccctgtcccaggcggaggtccagaag
cagtccatccaggaagtgagacgcagcctgcccgtgttcccctacagagaggacctgctc
ctggccatccagcagcaccagatcctggtcatcgagggagagacgggctccggcaagacc
acccagatcccacagttcctcatggagtcgggctacaatgatggaggcatgaagattggg
tgtacccagccccgtagagtggcagccatgtccgtagcagccagggtggcacaagaagtg
ggcgtcaagctgggcaacgaggtaggctacagtatccgttttgaggactgtacgtcagag
aggacagtactcaaatacatgactgacggaatgctgctgagggagttcctcacagagcct
gatctggccagctacagtgtggtcatcattgatgaggctcacgagcggacgctgcacaca
gacatcctgtttggcctgatcaaggacatcgcccggttccgtccggacctgaaggtgctg
gtggccagcgccaccctggacacagagcgcttctcctgcttcttcgatgacgcccccgtc
ttcagaatccccggcaggaggttccctgtggacatcttttacactaaggctcctgaggca
gactacctggaggcctgtgttgtgtcggtgctacagatccacgtcacacagccccccgga
gactgtctggtcttcctcactggacaggaggagattgagacttgctgtgagctgctgcag
gagagatgcaggcgtctgggctctaagatatctgagcttttggtgcttcccatctacgcc
aacctaccttccgacatgcaggccaagatcttcagcccaacaccacctggctcacgcaag
gtggtggtggccactaacattgcagagacctctctaaccatcgatgggatcatatacgtc
atagatccaggcttctgcaagcagaagagctataacgcccgcactgggatggagtctctg
attgtcacgccttgctcacgggcctcagccaatcagcgagcaggtcgtgcaggcagagtg
gctgctgggaagtgtttccgtctctacactgcgtgggcatttaaacacgagatggaggag
tccaccgtgcccgagatccagcgaaccaacctgggcaacgtagtgctactgctcaagagc
ttgggaattaatgaccttatccactttgacttcatggacccgccccctcacgagaccctg
gtgctagctttggagcagctatacgccctgggtgcactcaaccacctcggagagctcacc
aagttgggccgcaggatggctgagctgccggtggaccctatgctgagcaagatgatcctg
gcctcagaacagtataagtgttctgaggaggtgttgaccatcgctgctatgctgtctgtg
aacaactccatcttctaccggcccaaagacaaggtggttcacgccgacaacgccaggcag
aactttgtggtgcccggaggagaccatatggtgctgctcaatgtctacacacagtggctg
gagagtggctactccacccagtggtgctacgagaacttcatccagttccgctccatgaag
cgggcgcgggatgtcagggagcagctggagggcctgatggacaggatcgaggtggaggtg
tgcagctcaggcggcgacattgtgcccatccgcaaggcagtgacggcagggtatttctac
cacacggcacggcttagcaaggggggctacaagacggtgaagcaccagcagacagtctac
gtccaccccaacagctccctgttcgaggagcagccccgttggctcatctaccacgagctg
gtcttcactaccaaggagttcatgagacaggtgattgagatagacagcagctggctgctg
gaggtggctccccactactacaagaacaaggagctggaggacagcagcagtaagaagatg
cctcgcaaacagggcaaggccaaggaagagctgggctaa
DBGET
integrated database retrieval system
