Salmo salar (Atlantic salmon): 106605327
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Entry
106605327 CDS
T04363
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106605327
Membrane trafficking [BR:
sasa04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
106605327
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
LRR_14
LRR_9
Ig_2
V-set
LRR_Zer-1
Ig_VEGFR-1-like_5th
LRRNT
Motif
Other DBs
NCBI-GeneID:
106605327
NCBI-ProteinID:
XP_014056293
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Position
ssa05:complement(56830427..56853242)
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AA seq
611 aa
AA seq
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MFVESVVRWGAFSILLQCGLLGVSAGDFPWPCPARCVCRLETLEANCSDKQLTSVSQGFA
SGTQRINLSRNKLKTLGRRQFFGMTQLEDLDISDNVIAMIEVEAFQGLQNLKTLCIRGNR
LKIISVGVFSGLPSLRFLDLSENEILVFLDYTFRELVSLHQLEAGENDLVFISQRAFTGL
QNLQELNLDRSNLTSIPTEALSQLQSLTRLRMFRLTISALPNNAFRRLHRLRSLVISHWP
LLDTLASNSLIGLNLTSLVLSSCNLSAVPYQVLRHLVYLGYLDLSYNPITAIQGNLLGDL
LRLQELHLAGGNLLRIEPGAFRGLAYFRLLNVTSNQLSTLEESAFHSVGNLQVLRLDGNP
LACDCRLLWVVRRRQRLNFDGRQPTCSTPDMVREREFRDFSEKELPRLFTCRQARIVDRR
SQEVRVEEGTTVLFSCKADGDPMPSFTWLSAQRIPLSTTGRIRVLSNGTLEVRYAQVQDS
GTYRCTAGNAAGNDSLYVSLYVKGFPRNRTMPFFTDEGWIESSHAPTANSSAQVANQYPF
DAKTLIIATTMGFLSFLSSVAICFVFMFFWSQSKGQIKHTATIDYVPRTSMGVGGGGGGG
GDAGKFTMKLI
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtggagtctgttgtccgatggggggcatttagcatcttgctccagtgtggatta
ttgggtgtgtcagcaggggacttcccctggccttgccctgccaggtgtgtgtgtcggctt
gagactttagaagcgaactgctctgacaaacagctgacttctgtgtctcagggcttcgct
agtggcacccagcgcattaacttatctcgtaacaagctgaagacgctgggtcgtcgccag
ttctttggcatgacccagctagaggatctggacattagtgacaatgtcatcgccatgatt
gaagtggaggctttccagggcctgcagaacctcaagaccctgtgcattaggggcaaccgc
ctcaagatcatctctgtgggggtcttctccggactgcccagcctgcgcttcctggacctg
agtgagaatgagatcctggtctttctggactacaccttccgtgagttggtgagcctgcac
cagctggaggctggggagaatgacctggtgttcatctcccagcgggcctttaccggcctg
cagaacctgcaggagctcaatctggaccgcagcaacctgacctccatccccaccgaggca
ctgtcccagctccagagcctgactcggctgcgcatgttccgcctcaccatttcggcactg
cccaacaatgccttccgccgcctgcatcgactgcgcagcctcgtcatctcccactggccc
ttgctggacaccctggccagcaacagcctgattggcctcaacctcacctcgctggtcctc
agcagctgcaaccttagtgctgtcccataccaggtgctgcgccacctggtctaccttggc
tacctggacctgtcctacaaccccatcacagccatccagggtaacctgctgggggacctg
ttgcggctgcaggaactgcacctagctgggggcaacctgctccgcatcgagccaggggcc
ttcagggggctggcttacttccgtctgctcaacgtgacatccaaccagctcagcacgctg
gaggagagtgccttccactcggtggggaatctgcaggtcctgcggctagatgggaacccc
ctggcctgcgactgccgactgctctgggtggtccgccggcgacagcgcctaaactttgat
ggccgccaacccacctgctccaccccggacatggtgcgagagcgggaattccgggacttc
tcggagaaagagctcccgagactgttcacctgtcggcaggcccgcattgtagaccgcagg
tcccaggaggtcagggtggaggagggcactacggtgctcttctcctgcaaggcggacggt
gacccaatgccctcctttacctggttgtcagcccagcggattccgctctccactacgggg
cgcatcagggtgttgtccaatgggactctagaggtacgctatgcccaggttcaggacagc
ggcacataccggtgcacagcgggcaacgctgcaggcaacgacagcctgtacgtcagcctc
tatgtgaagggtttcccacgtaaccgcaccatgccctttttcaccgacgaaggctggata
gagtcttcacacgcccctactgccaactcctctgcccaggtggccaaccagtatccgttt
gatgccaagacactgatcatcgccaccactatgggcttcctgtccttcctcagctcagtg
gctatctgcttcgtcttcatgttcttctggagccagagcaaggggcaaatcaaacacaca
gccaccatcgactatgtgccccgtacctcaatgggggtaggaggaggaggagggggtgga
ggtgacgctggcaagttcaccatgaagcttatctaa
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