Salmo salar (Atlantic salmon): 106606743
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Entry
106606743 CDS
T04363
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04010
MAPK signaling pathway
sasa04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
106606743
04020 Calcium signaling pathway
106606743
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sasa04040
]
106606743
Ion channels [BR:
sasa04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
106606743
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
106606743
NCBI-ProteinID:
XP_014058580
UniProt:
A0A1S3S2G2
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All DBs
Position
ssa06:complement(19548561..19640665)
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AA seq
1720 aa
AA seq
DB search
MVEYSLDLQNINLSAIRTVRVLRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVFF
IFGIIGVQLWAGLLRNRCYLEKNFTLSSGLTLPAPYYQPEEDDERPFICSLAQDNGIMSC
GDVPARREGGRTCCLDREDAYHRQSLGLIPEPLVNGSASAVGLCINWNQYYTRCHTGHSN
PHKGAINFDNIVYAWIVIFQVITLEGWVEIMYYVMDAHSFYNFIYFIFLIIIGSFFMINL
CLVVIATQFSETKQREHQLMQEQRAQCLSSSTLASLHEPGDCYEELFQLVCHMLRKARRR
SVALYNQLRGRPLPPPPTRGRGRGGGRGGGEGGGSANGGERHHLRQPRQSHCPHQSKLDP
IHSSQPLGNSIALAVPQNTEDCPQCAAALSLREGAGAVGDSANGEEEEGAVEETDREENH
LEEKVEEGEGVKKKRKRRSCFGHCKDMWDEMRKKLWGIVESKYFNRGIMIAILINTISMG
IEHHNQPEELTNVLEISNIVFTSMFTLEMILKLTAFGFFAYLRNPYNIFDGIIVIISVCE
IIGQSDGGLSVLRTFRLLRVIKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSI
LGMHIFGCKFSLKTETGDTVPDRKNFDSLLWAIVTVFQILTQEDWNMVLYNGMASTSPCA
ALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSEDDRSSCNFDENSEKLKDSLHL
SDPKICTLTPNGHLDLSPTPTGLYTADRLTFALGSRKNSVISLGRANLEGRANLEGRALC
RGSSSLYHNWGRPASQTQAMWGRRSSWNSLGRPSRALGLGLGVGGGGSLRSRSPHATNPA
EQESLLSPPHPPPHLAHPPPLLALNFVPRRDRRALSLELPELLQVPGTPLASMLPYPRKK
SFSSGLVGGGAGGEHQDCNGKAPSAQLQLQLQLPPHPHPHPQLLTEVFPQVNTRKDREDL
DDDIDYSLCFRIQKMMEVYRPEWCETREDWSVFLFSPQNRFRRVCQSIIAYKMFDYVVLA
FIFSNCITVALERPKIMQGSLERVFLTISNYVFTAIFVAEMTLKVVSMGLYIGEQAYLKS
SWNVLDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLI
TSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFYCFGPDVKNITNKSDCLQANYKWVHHK
YNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVGVDQQVTNAQKIPYYASYSPLRLWIHT
LCTTYYLDLFITFIICINVITMSLEHYSQPRSLDLVLKYCNYFFTSTFVLETLLKLTAFG
FRRFFKDRWNQLDLAIVLLSVMGITLEEIDYSASLPINPTIIRIMRVLRIARVLKLLKMA
KGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGELVCNEDYPCEGMSRHATFE
NFGMAFLTLFQVSTGDNWNGIMKDTLRECPPDYGPDYSCNPSLQFISPMYFVSFVLTAQF
VLINVVVAVLMKHLDDSNKEAKEEAEMDAEIELELATGALCCMGPEGVCSGGKKGGGAGG
GGGAGGGGGGGGGVERGMGVPGSSSGGNMHHHVATTHPGTLQDLNNRDPYSPAQESQWLD
SVSLLIKDSFEGEMLMIDNLSGSVFHHYSSTSPPVWNDCKSHPQLEQIRLAEIEQASLRS
DQMSDKSSSPALPDDLSLDDQSVHQLLVREGKVEMERWRG
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atggtggagtactcattggacctgcagaacatcaacctctcagccatcaggacagtcagg
gtcctcagacccctcaaagccatcaacagagtacccagtatgcgtatcctggtgaatctc
ctcctggacactctgcccatgctgggaaacgtcctcctgctttgtttcttcgtcttcttc
atcttcggcatcatcggagtgcagctttgggcgggattactgaggaaccgatgctacctc
gagaaaaacttcaccctttcatcaggtctgaccctgcccgccccgtactaccagccggag
gaggatgacgagcgccccttcatctgctctctggctcaggataacgggatcatgtcgtgt
ggtgacgtcccggcccggagggaggggggaaggacctgctgtctggacagggaggatgcc
taccaccgccagtccctggggctcatccctgaaccactagtcaacggttcagccagtgca
gtgggtctctgtatcaactggaaccagtactatactagatgccatactggacatagtaat
ccacacaagggggcgatcaacttcgataacatcgtatacgcctggattgttatcttccag
gtgatcaccctggaaggctgggtagagatcatgtactatgtaatggatgctcactccttc
tacaacttcatctacttcatcttcctcatcatcattggctcgttcttcatgatcaacctg
tgtctggtggtcatcgccacccagttcagtgagaccaagcagcgggagcaccagctgatg
caggagcagcgggcccagtgcctgtcctcctctaccctggccagcctgcatgaaccgggg
gactgctacgaagagctcttccagctggtctgccacatgctgcgcaaggcccgcaggaga
tctgtagccctgtataaccaactgaggggaaggcctctgccaccaccgcccactagaggg
agaggaagaggaggaggaagaggaggaggggaaggaggagggagtgcgaacggaggggaa
cggcatcacctgaggcagccacgacaatctcactgtcctcaccaaagcaagctggaccca
atccacagctcccaacccctgggcaactccatcgccctggccgtccctcagaacacagag
gactgccctcagtgcgctgcggcactgtcactcagggaaggggcgggagctgtgggcgac
tcggctaatggggaggaggaggagggggccgtggaggagacggacagggaggagaaccac
ttggaggagaaagtggaagagggggagggagtgaagaagaagaggaagaggaggtcgtgt
tttggacactgtaaggacatgtgggatgagatgaggaagaaactttggggcatcgtggag
agcaaatacttcaacagaggaatcatgatcgctattctcatcaatactatcagcatgggg
atagaacaccacaaccagccggaggagctgactaacgtgttggagatcagtaacattgtg
ttcaccagtatgttcaccctggaaatgatcctcaagctgaccgcctttggcttcttcgcc
tacctgaggaacccctacaacatcttcgacggcatcatcgtcatcatcagtgtgtgtgag
atcataggtcagtctgatggaggtctgtctgtcctgaggaccttcagactgttgagggtg
atcaagctggtgcgcttcatgccagcactacgcagacagctggtggtgctgatgaagacc
atggacaacgtggccaccttctgcatgctcctcatgctcttcatattcatcttcagtatc
ctggggatgcatatctttggctgtaagttcagtctgaagacagagactggagacactgtt
cctgacaggaagaactttgactctctactgtgggccattgtcactgtgtttcagattctg
actcaggaagactggaacatggtgctgtataatggaatggcctccacctctccctgtgct
gctctctactttgtggctctaatgacctttggcaactacgtcctcttcaacctgctggtg
gccatcttggtagagggctttcaggctgaaggggatgccaaccggtcgtactccgaagac
gacaggtcctcatgtaactttgacgagaactctgagaagctgaaggactctcttcatctc
tctgaccctaagatctgcaccctaacccccaacggtcacctggacctgtccccaacaccc
acgggtctgtacacggccgacaggctcactttcgctctgggctcacgcaaaaacagtgtc
atctctctgggcagggctaacctggagggcagggctaacctggagggcagggctctgtgt
cgggggagcagctccctgtaccacaactggggccgtcctgcctcccagacccaggcaatg
tggggccggcggtctagctggaacagcctgggtcgcccctcccgtgccttgggcctggga
ttgggggtaggaggagggggtagcctgcgctcccgcagcccccacgccaccaacccggcc
gagcaggagtccctcctctccccccctcaccctcctccgcacctcgcccaccctcctccc
ctcctggccctaaactttgtcccgcggcgggaccgccgggcgctgtccttggagctgccg
gagctcctccaggtcccggggacccctctggcgtcaatgctgccttaccccaggaagaag
agcttctccagtgggttggttggtggaggggctgggggggagcaccaggactgcaatggg
aaggccccatcggcccagctccagcttcaacttcagctgccgccacatccccatccccat
ccacagctactgacagaggtgttccctcaggtcaacacacgcaaggacagagaggacctg
gatgatgacatcgactatagtctgtgtttccgtatccagaagatgatggaggtgtacagg
ccagagtggtgtgagaccagagaggactggtctgtcttcctcttctctcctcagaacagg
ttcaggcgggtatgccagtccatcatagcctacaagatgtttgactatgtggtgctagcg
ttcatcttctccaactgcatcaccgtggctctggagagacctaagatcatgcagggcagc
ctggaaagagtcttcctaaccatctccaactacgtcttcacagccatctttgtagcagag
atgacgctcaaggtggtgtctatgggcctgtatataggggaacaggcatacctgaaaagc
agctggaacgtgttggacggcttcctggtctttgtgtcattgattgacattgtggtgtca
atggcgggcggggctaagatcctgggggtattgagggttctccgattgctccgcacactg
cgccccctcagggtgatcagtcgagccccaggtctgaagctggtagtggagactctaata
acatctctgaaacctataggaaacattgtccttatctgctgtgctttcttcatcatattt
ggtatcctgggggtgcagctgttcaaagggaagttcttctactgctttggccccgatgtc
aagaacatcaccaacaagtctgactgtctgcaggccaactacaaatgggtccatcacaag
tacaactttgacaacctgggacaggctctgatgtccctgtttgtgctggcttcgaaggac
ggctgggtcaacatcatgtaccatggcctggatgctgtaggggtggaccaacaggtaact
aatgcccagaagatcccctactatgccagctacagccccctccgcctgtggatccacact
ctgtgtaccacctactacctggacctcttcatcaccttcatcatctgtatcaacgtcatc
accatgtcactggaacactacagccagccacgatctctggatctagtgttgaagtactgt
aactatttcttcacatccacctttgtactggagaccctcctgaagctcaccgcctttggc
ttccgacgcttctttaaagacaggtggaaccagttggatctggccatcgtgttgctgtca
gtgatgggcatcactctggaggagattgactacagcgcttctctccccatcaaccctacc
atcatacgcatcatgagggtgttgaggatcgcacgagttctgaagctgctgaagatggct
aaaggaatgagagctctgctggatacggtggtccaagccctaccacaggtggggaacctg
ggtctgctcttcatgctcctgttcttcatctatgcagcactgggggttgagctgtttgga
gaactggtgtgtaacgaggactacccatgtgaggggatgagccgccatgctacctttgag
aactttggcatggccttcctcactctgttccaggtctccactggggacaactggaatggg
atcatgaaggacacgttgagggagtgccctccggactacgggcctgactactcctgcaac
cccagcctgcagttcatctctcccatgtactttgtgtcctttgtgttgacggcccagttc
gtcctgatcaacgtggtggtggcggtgttgatgaagcacctggacgactccaacaaggag
gccaaggaggaggcggagatggacgctgagattgagctggagctggccacgggggcccta
tgctgcatggggccggagggagtctgttcaggagggaaaaaaggtggaggagcaggggga
ggtggaggagcagggggaggtgggggaggtggaggaggagtggagagagggatgggagtc
ccaggcagttcctctggggggaatatgcatcatcacgtggcaacgacgcatccaggaaca
ctgcaagatctgaacaatcgtgatccctactctcctgcacaggagagtcagtggctggac
agtgtgtctctgctgataaaggactcatttgaaggagagatgctgatgattgacaacctc
tctggatctgtcttccatcactactcttctacctctcctcctgtctggaatgactgtaag
agccacccacaattagagcagatcaggctggcagagatagagcaggcatctctgaggtca
gaccaaatgtcagacaagtcgtcgtctccggccctacctgatgacctcagcctggacgac
cagagtgtccaccagctgctggtgcgggagggcaaggtagagatggagagatggaggggt
taa
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