Salmo salar (Atlantic salmon): 106606965
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Entry
106606965 CDS
T04363
Name
(RefSeq) THO complex subunit 4-like
KO
K12881
THO complex subunit 4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
sasa03040
Spliceosome
sasa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106606965
09122 Translation
03013 Nucleocytoplasmic transport
106606965
03015 mRNA surveillance pathway
106606965
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
106606965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106606965
03041 Spliceosome [BR:
sasa03041
]
106606965
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106606965
TREX complex
106606965
Spliceosome [BR:
sasa03041
]
Complex C
Other components
EJC/TREX
106606965
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106606965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
106606965
NCBI-ProteinID:
XP_014058947
UniProt:
A0A1S3RBI7
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All DBs
Position
ssa06:27711690..27715092
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AA seq
263 aa
AA seq
DB search
MADKMDMSLDDIIKQNRQQRGGAGGRGGGRGRGRGGSGGGRGGGVGRGAAGGFGGRGGGS
GPMRNRPNLSRGRARPTPYSRPKQLPDKWQHDMYGNHGFNASVGGGAGVETGGKLLVSNL
DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG
RPMNIQLVTSQIDTQRRPPMQGMNRGGGMNRARGGGFRGMQRGRGAGRGGGRGRGGRGGS
TKPLSAEELDAQLDAYNARMETS
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagatggatatgtctctagacgacatcatcaagcagaacaggcagcagaga
gggggcgcaggaggccgtggtggtggaagaggacgtggccggggaggctctggcgggggc
cgaggtggtggtgttggccgtggagcagctggaggctttgggggccgaggtggaggatcg
ggccccatgaggaaccgaccgaacctgagccgtggcagagcaagacctacgccatacagc
aggcccaagcagcttcctgataaatggcaacacgacatgtacggcaatcatggcttcaat
gccagtgttgggggtggcgctggtgtggaaaccggagggaagcttcttgtctccaatctc
gactttggtgtttcagacgcagatattcaggagctctttgcggagtttggtacactgaag
aaggcagctgtccactatgaccggtcgggcaggagcttaggcactgcagacgtccacttt
gagaggaaagcagatgctctaaaagctatgaaacagtacaacggtgtaccacttgatggg
cgtcccatgaacatacaactcgtcacatcacagatcgacacacaaagacgaccacccatg
cagggtatgaaccgaggcggtggcatgaacagggctcgtggtggtgggtttagagggatg
cagagaggacgtggagcaggtcgtggaggaggcaggggccgaggtggccgtgggggaagc
actaagccactttccgctgaagagctggatgcccagctagatgcctacaatgccaggatg
gaaacaagctaa
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