Salmo salar (Atlantic salmon): 106607064
Help
Entry
106607064 CDS
T04363
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106607064 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106607064 (DDX5)
03009 Ribosome biogenesis [BR:
sasa03009
]
106607064 (DDX5)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106607064 (DDX5)
Spliceosome [BR:
sasa03041
]
Complex A
U1 snRNP components
U1 related factors
106607064 (DDX5)
Complex B
106607064 (DDX5)
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
Pre-60S particles
Helicases
106607064 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106607064
NCBI-ProteinID:
XP_014059113
UniProt:
C0HB50
LinkDB
All DBs
Position
ssa06:29316805..29322336
Genome browser
AA seq
614 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFYQ
EHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNMR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQI
NVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYPN
NSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGGH
SRGGRGGSGFRDDRRDRYSSGGRRDFTSFRDRENDRGFDSGPKKVFGTNSQSGGYGASGF
DKSGNGFGGYGSNGQSNYGTSQAGAFPTQNFQAPQFSANQGGAQNGMSHQQFPFTQQQAP
QPMVPYPMPPQFPQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagcggaccacct
cgttttggaggcggtggaagaggtggtggtggggggaagtttggtaatcccggtgataga
ctgcgcaagaagcactggaaccttgacgaactctctaaatttgaaaagaacttttaccaa
gagcaccccgatgttactcggagatctccgcaagaggttgcacagtacagaagtactaaa
gctgttactgtgaagggaagggactgccctaatccaattatgaagttccatgaagccagt
tttccaacctatgtgatggatgtcattaacaaagcaggctggtcagaaccaacaccgatc
caagcacagggttggccactggcattgagtggcaaagacatggttggcattgcacagaca
ggttctgggaaaactctctcatacttgttgcctgcaatcgtgcacattaaccaccagcct
ttcctggaacgtggagatggccctatttgcttggtgcttgccccaacccgtgagctggct
cagcaggtccagcaggtggcggcagagtatggcagagcttctcgcctgaagtctgtctgc
gtttatgggggcgcacccaaagggccacagctccgtgacctggatagaggtgtggagatt
tgcattgccacacctggcaggcttattgacttcctggaggcgggaaagaccaacatgcgc
agatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggtttcgaacca
caaatccgaaaaattgtggaccaaatcagacctgaccgacagacgctgatgtggagtgcc
acctggcccaaagaggtgcgccagctggcagaggacttcctaaaggactacgtccagatt
aatgtgggagctctgcagctgagtgccaaccacaacatcttgcagatcgtggatgtttgc
aatgatggcgagaaggaagacaaactcctccgcctacttgaggagatcatgagtgagaag
gagaacaagaccatcatctttacagagaccaagaggagatgtgacgagatcactaggagg
atgaggcgggatggttggccagcaatgggcatccatggagacaagagtcagcaggagagg
gactgggtgctcaatgagttcaagttcggaaaggctccaattctcattgccacagacgtc
gcttccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactaccccaac
aactctgaggactatatccaccgcatcggcagaactgcccggagccaaaagactggcaca
gcctacaccttcttcacccctaacaacatgaggcaggccagcgacctcgttgccgtgctc
cgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggtcat
tcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcctcc
gggggcaggcgtgacttcactagctttagggacagggaaaacgatagaggttttgacagt
ggaccaaagaaggtctttggcacaaattcacagagtggaggctatggggcaagtggcttt
gacaaaagcggcaatggttttggcggctatggcagcaacggccagtcaaactatggtacc
agccaggccggggcattcccaacgcagaacttccaggccccacagtttagtgccaaccag
ggaggggcacagaatggcatgagccatcaacagttccccttcacacagcaacaagcacca
cagcccatggtgccttacccaatgccccctcaattcccacagtaa
DBGET
integrated database retrieval system
