Salmo salar (Atlantic salmon): 106607147
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Entry
106607147 CDS
T04363
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106607147
03036 Chromosome and associated proteins [BR:
sasa03036
]
106607147
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106607147
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106607147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
106607147
NCBI-ProteinID:
XP_014059252
UniProt:
A0A1S3S4G5
LinkDB
All DBs
Position
ssa06:33879943..33904873
Genome browser
AA seq
1927 aa
AA seq
DB search
MEDKKKKKEDKKKREASQKVTEQKVKVPESTKATSTQSLATPGSVSPSPGPTPPSSPCPA
AGFAVPPGGNNANRAAVANGQPPTGTQRYMPREVPPRFRCQQDHKVLLKRGQPPLSCMLL
GGGSGRGDTPPLSQGDAPNATTSGSTDPNLGSPSPSPPHASPSSSVAASSTYANSTWGVG
SGGQPPSQGWEKVIVDGSDLEEWPSIVGGDRVVTEGAELDGPNNSSASRTDKCTQQHLRA
GGVGSSDSPSPPHSSPSSLTECVLSGVVWGSSSQPGIGVAAAATTEGLVLNNSKVSFLPG
AQESPLSVNSGIPGANFNPNANPSAWPALVQDGTTGVGAATTEAVPSSITTSFSASTTHT
HPLSSVNQASHQHQLHEMPARDGAHLHGDWGGLGLELGEGPNQGGRDLVDSGVVGGSGNL
SASSSSSTTSSSSWRALPPPSNLNTGASKTDGWDRLGGDAAQGEEANVWGFGSQGEKAGL
AVNEEWVRGNVSSNTPVVSQGAWDGATEEGWGGTQGSTGVRGSSNPAIGSSGGGESSSSS
GGSGGGGGGGGISQESASPTFASMTTAWDNQKGVDAVGEWAGQCGRGSGGPSCSSGGGSR
AGSHNRHQEHSRHRSSNPPPNPEVALQSMLSGSDLDPRVLSNTGWGQTQVQQNVAWDLDI
GAASQNEGSSSPAFPSQAVNSTGRSSTYPASNSTMTTDPSAGAHIPTMNTGPGPVPSKGG
WDDESNCAPPSNMRNSAASRTPVEDIDGSQGKTSGAWGDVGTSESHGKGWGSEEQEGRDR
RGGGGSNWRDFGEQGGGRGGGWGGGQEEKATAGGWKELGREGGGWGQRGGGNWVQREPKT
VSGGWGEGRGRGGGNTGKGSWGNIDEGGPQRSWGSGGDMGGKPHQDWCMKPHSAQIPNSQ
AATLKAPNQQQHQSQTQQPPGGLGRSGGPPTQNQNQSSGWTAGPIPQIPVGPAEAPEPSG
WEEPSPQSISRKMEIDDGTSAWGDPTCYNSKNVNLWDKNSAPSGPPPPLQGQTQQGPPTS
VQQPPPRRQPAIPANHDSNPGNAPGMGPGMWGGGGNLVGQSVDNGTASWGQTSDAPSGWG
DPDNSSKAAGWGNPSSKSGSKSVQESWGKGEGPVTASRHSSWDDEEDVGGVWNSTGSQTS
SNYNSGGWGQGPGGKRGNFKGGGGDNWMNPMTRQFQNMGLMGEDLSLDKKLEGDKRGMND
YSGEMRRGGRGGGGYRMPSSKDMGPGDMGPYSDKMGGHGLFGGSGGNPQSRGMHQPGMHP
MNPSQGLRGQVPHQFLSAQVPGPMLKQIPSPGSSVGGVGGGVFPPQLSPQQLAVLSNIYP
HVQQFHLACQLLLQQQQQQQLLQNQRKLPQSIRQQPDPQQLARIMAILQQQRQQQQGVVG
GGSGSSKLSPSLGGAPKQPLADSMPHPGMGGPLSDLHAKTQGMYSGLAPGGNLSGLELGS
MVGGVKDGGGQQSRFKWMMEGHSPAPSPPDTAHHKNGPLPMAMKVREGSPYSQYELLGVD
DLGMPPQGPSDSWHRTPGSKMGTMTGTSSWPPEFQPGVPWKGIQSADPESDPYMTPGSVL
GSHGPSSLSDSDHQLLRDNTGPNPSLNTLLPSPGAWPYSASDSPLGNAHSTAKYSEYKPS
WPPEPIGHNKPWKTSRVSSQLPRPPPGLTSQKQASTSPWGSGAPRLARGWGEGGGSQDSR
FGTGSAWSDGVASRGSCWLLLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYS
TRQEAAKAQGALHMCVLGNTTILAEFVSEEEVARYFAHSQVGGAEGASPAAGAAQGSSGT
RTAMGNSGGGSPGSERAAIGAGNSGAGGVLGSVGPSGWQTLDGTGSSPEATSAQGPGLGI
FAQWSANGAGKGVGRVEAGRSGLWGGVTPGYSSSSLWGAPQMEDRHQMGSPAALLPGDLL
GGGADSI
NT seq
5784 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaagaagaaagaggataaaaagaaaagggaagcttcccagaaggtg
actgaacaaaaagtcaaagtgccagaatcaaccaaggccacctccacacagtcactagcc
actcctggctctgtgtctcccagccctggccccactccaccatcgtccccctgccctgca
gctgggttcgctgttcctccgggcgggaacaatgcaaaccgggcggctgtggccaacgga
cagccccccaccggaactcagcgctatatgcccagagaggtgcccccacgattccgctgc
cagcaggaccacaaagtgcttctgaagagaggccagccaccactgtcctgcatgctgctg
gggggaggcagcggtaggggagacacaccccctctttcacagggagatgcccccaatgca
accacatctggatccacagatcccaatctggggtcaccttctccttcacccccccacgcc
tcaccctcatcttcagtcgctgcttcttcaacttatgcaaattccacatggggggtgggc
tctggcggccagcccccttctcagggctgggagaaggtgatagtggatgggagtgacctt
gaagagtggcccagcatcgtgggtggggatagagtggttactgagggagcagagctggat
ggccccaacaacagcagtgcctcacggactgacaaatgcacccaacagcatctgagggca
ggaggagttgggagttcagacagtccctccccaccccactcttccccctcgtcactcact
gaatgtgtcctgtctggtgtcgtgtggggctcttccagtcagcctggaattggagtggct
gcagcagcaacaacagaggggctagtgctcaacaattccaaagtctcctttcttcctggg
gctcaggagagccctcttagtgtgaacagtggaattcctggtgccaacttcaaccctaat
gccaacccttcagcctggcctgcccttgtgcaggatggaacgacaggggttggtgcagct
accactgaagctgtgccctcatccatcacaacatccttctctgccagtaccacccatact
catccactctcctctgtgaatcaagctagccatcagcaccaactccatgaaatgcctgcc
agggatggagcgcatctccatggggactggggaggcttggggctggagcttggagaagga
ccaaatcaaggaggcagagaccttgtggacagtggggttgttggagggagcgggaatctc
tctgcctcgtcatcctcctccacaacctcttcctcttcatggagagccttgcctcccccc
tctaacctcaacacaggtgcctctaagactgacgggtgggacagattagggggagatgca
gctcagggggaggaggccaacgtgtggggcttcggcagccaaggtgagaaagctgggtta
gcagtaaatgaggaatgggtcaggggaaatgttagctcaaataccccagtggtatctcag
ggagcatgggatggggctacagaggagggttggggcggtacacaggggtcgacaggtgtc
aggggttccagcaacccagctataggaagtagcggtggaggcgagagcagcagcagcagt
ggaggtagcggaggtggtggtggtggcggtggcatatcccaggagtctgcctcaccaaca
tttgcttctatgacaacagcttgggacaatcagaaaggggttgatgctgtgggggaatgg
gcaggtcaatgtggcagaggaagtggaggcccctcatgctccagtggaggagggtccagg
gctgggagtcacaatcggcaccaggagcattcccgccaccgctccagcaacccacccccc
aaccctgaagtggccttacaaagcatgctcagcgggtcggacctggatcccagggtgctg
tccaacaccggatgggggcagacccaggtacagcagaatgtggcctgggacctggatata
ggagcagccagtcaaaatgagggaagcagttcccctgcatttccatcccaagccgttaat
tctactggccggtcttctacttaccccgcaagcaacagcacaatgactactgatccatct
gctggggcccacatacctactatgaacactggtcctggccctgtaccatcaaagggtggc
tgggatgacgagtcaaattgtgctccaccatccaacatgcggaattctgctgcctccagg
acgccagtggaagatattgatggcagccagggaaagacgagtggagcctggggtgacgtc
ggtacttcagagagccatggcaaaggctggggcagtgaggagcaggaggggagagaccgc
agagggggcggaggaagtaactggagagattttggagaacagggtggtggaagagggggt
ggctggggaggtggtcaggaggagaaggcgactgcagggggttggaaagagctgggtagg
gagggaggtggatggggacaaagagggggaggcaactgggtgcagcgtgaacccaagaca
gtcagtggaggctggggggaagggaggggcagaggtggaggcaacacgggcaagggatct
tggggtaacatagatgagggaggcccacagaggagttggggaagtggaggtgacatgggc
ggcaaaccgcaccaggactggtgcatgaagccgcattcagcacagataccaaacagccaa
gcggcaacactgaaagccccaaatcaacagcaacaccaatcacagacccaacagccacca
ggaggcttgggcaggtcaggaggtcctcccacccagaatcagaaccaaagctcgggctgg
actgctggccccatccctcagatccccgttgggcctgctgaggctcctgagcccagcggg
tgggaggagccctcccctcagtccattagccgcaagatggagattgacgatggcacttca
gcctggggcgatcccacctgctacaacagcaagaatgtgaacctgtgggacaaaaatagt
gccccctctggtccgccaccgccacttcaaggccaaactcaacagggaccacctacatct
gtacaacagccaccaccaaggagacagcctgcgatcccagctaaccatgactcaaaccct
ggcaatgcacctggaatgggcccaggtatgtggggagggggtggcaacctcgttggacaa
tctgtggataatggtaccgcttcctgggggcagacctctgatgcaccatctggctgggga
gacccagataactcaagcaaagctgctggttggggaaacccctcatctaaatctggctca
aagtcagtgcaagagagctggggcaaaggagagggcccagttacagcctctcgacactcc
agttgggatgatgaggaggacgttggtggagtttggaacagcacaggctcacagaccagc
agcaactacaactctggtggctgggggcaaggccccgggggaaagaggggcaacttcaag
ggtggaggtggagacaactggatgaacccaatgacacgacaattccaaaatatgggactc
atgggcgaggacttgagtcttgataaaaaattggaaggagataagagagggatgaatgac
tacagcggtgaaatgcggagaggaggaagaggtggaggcggctaccgtatgcccagttcc
aaagacatgggtcctggagacatggggccttacagtgacaagatgggtggtcatggttta
tttggtggcagcggtgggaatcctcagtctcggggaatgcaccagcctgggatgcatccc
atgaacccctcccaagggttacgtggacaagtccctcatcagttcttgtctgcgcaggtg
ccgggccccatgctaaagcagataccctctcctggcagcagtgttggaggagtcggagga
ggggtgttcccacctcagctctccccacagcaacttgcagtacttagtaacatttacccc
catgtgcagcagttccacctggcttgtcagctccttctgcagcagcaacagcagcagcag
ctcctgcagaaccagaggaagttgccccagtctatacgccagcagcctgatccacagcag
ctggctagaatcatggctattctgcaacaacagagacagcaacaacagggagtggtaggc
ggaggcagtgggagctccaaactgtccccatctcttggaggggcaccaaaacagccgttg
gcagactcgatgccccaccctggtatgggtgggcccttgtcagatcttcatgccaaaaca
caggggatgtactctgggcttgctcctggaggcaacctgtctgggctggagctgggctcc
atggtggggggggtgaaggatggaggagggcagcagtcccgcttcaaatggatgatggag
ggtcactctccggccccctctcccccagatacagcccatcacaagaatggtcctttaccc
atggccatgaaagttcgagagggctccccatattcacagtatgagttgctcggggttgat
gatttgggaatgccccctcagggcccttctgacagctggcaccgtacccctggaagcaag
atgggcaccatgactgggacatccagctggcccccagagttccagcctggagtgccctgg
aaaggcatccagagtgccgacccggagtctgacccttacatgacccctggcagtgttctg
ggctcccatggaccctccagcctcagtgactctgaccaccagttactgcgagacaacaca
gggccaaacccctccctcaacaccttgctgccttcaccaggtgcctggccctacagtgcc
tcagacagcccccttggcaatgcacacagcacagcaaagtactcggagtacaaacccagc
tggcccccagagcccatcggacacaataagccgtggaagaccagtcgcgtcagttcccag
ctgccacgcccccctcctggactgaccagtcagaaacaggcctcgacatccccatggggc
agcggagccccgcgtttggccaggggctggggagagggcgggggcagtcaggattcaaga
tttgggacaggctcagcgtggagtgatggtgtggcctccagaggcagctgctggctattg
ctcagcaacctcacccctcagatcgacggttccacactacggactatctgtatgcagcac
ggccccctgctgacctttcacctcggcctgacccagggcagcgccctgattcgctacagc
acacgtcaggaagcagccaaggctcagggtgcactgcacatgtgtgttctggggaacacc
acaatcctggcggagtttgtgagtgaggaggaagtggctcgctattttgcacattcccag
gttggaggtgcggagggggccagcccagcggcaggggcagcccagggctcgtcaggaacg
cgcacagccatgggcaacagcggcgggggctccccggggagtgaacgagcagcaatagga
gcaggaaacagcggggcaggaggggttctgggtagtgtggggccttccggctggcaaact
ttggatggtacgggcagctctccagaggccacctcagcccaaggtcctgggcttggtatt
tttgctcagtggagcgccaacggggctgggaaaggggtgggacgggtagaggcagggagg
tctgggctctggggtggtgtgaccccaggttactccagcagcagcttgtggggtgcaccc
caaatggaggacaggcaccaaatgggcagcccagctgccctgttgcctggtgacctgctg
ggaggaggggctgactccatctga
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