Salmo salar (Atlantic salmon): 106607544
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Entry
106607544 CDS
T04363
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106607544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106607544
03041 Spliceosome [BR:
sasa03041
]
106607544
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106607544
Spliceosome [BR:
sasa03041
]
Complex B
Other components
Prp19-related factors
106607544
Complex C
106607544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21
ARM_TT21_C
NRDE-2
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
106607544
NCBI-ProteinID:
XP_014060052
UniProt:
A0A1S3S6T4
LinkDB
All DBs
Position
ssa06:44341334..44367386
Genome browser
AA seq
850 aa
AA seq
DB search
MPSLNGKPDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGTMSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCIMEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGKDEEEDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATISDLAPGQLGLDDMKLLEQQAQQLAAEAEQDK
PKLKEKILFVRSDTSRSELAELAKQANPDEIDIEDEDEDGDDEDQGPEEVQLEQKTVPTA
VFGGLKEGED
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctctaaatgggaaaccggacgtcatgtttgaggaagatgacttgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgttacatcgagttcaaa
caaaacggcacaatgtccatcctcaacatgatatatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgcgagagagacggaaacaggtcaaagggaag
tgcatcatggagccagcctacgaggagatcaacaactgccatgaaagagctctggttttc
atgcacaagatgccgaggatatggctagactactgccagtttctggtgtctcagtgtaag
atcaccaggagcagacgcacatttgaccgagcgctcagagcccttcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc
atccgtgtctaccgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcgttcctgcggcaagctggatgaagcagcagtacgtctggcagccgttgtcaat
gatgagagctttgtgtccaaggagggcaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgcttcacagaccagctgggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgggatgtgtatgaggaggccatcttaacg
gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgattgctgccaagatggagactacctccgagttggggaaagatgaagaagaggacgta
gacctggagctgcgtctggcccgctttgagcagctgatcgctcgcaggcccctcctgctg
aacagtgtgctgctgagacagaatccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttttac
gaggagaacgagcagctagacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggagagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcggagtactttgatgtgtcagagcccgtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggca
gtgtacgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactatgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gaccgctacgggggcaagaagctggagagggcccgggacctgtttgagcaggcgctggat
ggctgtccagccaagttcgccaagaccatctacctgctctacgccaaactggaggaggag
tttgggttggcgcgtcacgccatggcggtgtacgagagagccacgcaggcggtggacaac
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctatggcgtc
acctacaccagagcaatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgcctgcgcttcgcagacatggagagcaaactgggcgagatcgaccggggcaga
gccatctactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcag
acgtggaaggagtttgagatccgccacgggaacgaagacactatccgggagatgctgagg
atcaagcgcagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccatctcagaccttgccccgggccagctggggctggat
gatatgaagctgttggagcagcaggcccaacagctggccgccgaggctgaacaggacaaa
cccaaactcaaagagaagatcctcttcgtcaggagtgacacatctcgcagtgagctggct
gaactggccaaacaagccaaccctgatgagattgatattgaggatgaggatgaggatggt
gatgatgaagaccagggcccagaggaggtgcagctggaacaaaagactgtccccactgct
gtctttggagggctgaaagaaggagaagattga
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