Salmo salar (Atlantic salmon): 106607727
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Entry
106607727 CDS
T04363
Name
(RefSeq) collagen alpha-1(X) chain-like
KO
K19479
collagen type X alpha
Organism
sasa
Salmo salar (Atlantic salmon)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
106607727
NCBI-ProteinID:
XP_014060471
UniProt:
A0A1S3S808
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Position
ssa06:54231306..54237536
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AA seq
661 aa
AA seq
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MDLRVTSVLLLLVALAVATPERYYHVQKVSKQQQHYPTKSHVQTVSGEPGIPGSPGEPGP
MGPPGPPGNNGVGHPGQQGPPGPSGPAGYSAPGKPGNPGGPGKPGSNGMPGEKGHPGAPG
AMGPRGSPGSAGSPGPAGYSSPGKPGPHGLPGGMGPRGESGLKGHPGIPGLQGQKGERGV
GIPGAPGANGQVGPMGPSGMPGQPGVGKSGATGYPGEPGKSGTPGRDGAPGAMGQPGPKG
HNGNPGVGAPGKSGENGSPGMPGNMGPKGPQGHAGQPGAPGIPGVGKPGANGMPGDRGSP
GTSGTTGQKGEPGPTGYTGATGATGLMGPAGPQGARGFQGEPGVQGSKGDVGMLGAPGAK
GTKGDQGHQGYAGKAGIPGAAGPPGATGATGHQGNKGAQGHAGSPGQPGSNGLAGAKGHP
GTPGGPGKPGESGIPGSRGPVGPSGPAGQAGPRGHAGLPGAPGPAGQMAKGMSGPMGPPG
PPGSRGHDGNTGAMGPPGPPGPPGEMVYHHEKSMPIKSHEIMMPHEMMKAPMSAFSAVLT
VAYPSAGSPVPFNQIIYNGEQHYDPQTGIFSCQVPGLYYFSYHMHVNGANALVALYKNGE
PIMFSYDEYNKGFLDQLSGSTVLMLNAHDQVYIQVPDEETNGVFAADNVHCSFSGFLIAS
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacctcagagtgacaagcgttctcctcctcctggtggccttggccgtggcaacacca
gagagatactaccatgtacagaaagtatccaagcagcagcagcattatcctactaagagc
catgtccaaactgtttcaggtgagccaggtattcccggatcccctggtgagccaggacct
atgggcccccctgggcctcccggcaataacggcgtgggacatcctggacaacagggccca
cccgggccctccggacccgctggctactccgcacctggcaagcctggcaatccaggtggt
cctgggaaaccaggtagtaatggaatgcctggtgagaagggccatcctggcgcacctgga
gccatgggtccaagaggatcacccggttccgctggaagcccaggacctgctggatactct
tctcctggcaaacctggcccacacggtctgcccggaggcatggggccaaggggtgagagt
ggacttaaaggacatccaggtatccctggtctgcaaggacaaaagggagagaggggagtt
ggtattcctggggcaccaggtgcaaacggtcaagtgggcccaatgggaccctctggtatg
ccagggcaacccggagttggtaagtctggtgccactggataccctggggagcctgggaag
tcaggtactccaggtagggatggagctccaggagctatgggtcagccagggccaaagggc
cacaatggaaaccctggggtaggagcaccaggaaaatcaggtgagaatggcagtccaggt
atgcctggaaatatgggacctaaaggtccccagggacatgccggacaaccaggtgcacct
ggcattccaggagttggtaaaccaggagctaatggtatgccaggtgacagaggatcacct
ggtacatcaggaaccaccggtcagaaaggagagccagggccaacaggttacactggggca
acaggtgctactggccttatgggtccagctgggccacagggtgctagaggattccaggga
gaaccaggtgtgcagggatctaaaggggatgtcggcatgctgggagctccaggggcaaag
ggaaccaagggggatcagggacatcagggttacgcagggaaggcaggtatccccggggca
gccggccctcctggtgcaaccggcgctacaggacatcagggtaacaagggagctcagggc
catgctggctctcctggtcagccaggttcaaatgggcttgcaggagcaaagggacaccca
ggcacacctggaggcccagggaaaccaggcgagagcggcatcccagggtcaagaggacca
gtggggccttcaggtccagcaggtcaagcaggtcctaggggtcacgcaggtcttcccggc
gcacccggcccagctggccagatggccaagggaatgtctggtcctatgggtccacctgga
cctcctggttccagaggtcacgatggtaacacaggtgctatgggacctcctggcccacct
ggtccccctggtgagatggtctaccatcacgagaagagcatgcccatcaagtcccatgag
attatgatgcctcatgagatgatgaaggcccctatgtccgccttcagcgctgttctgaca
gtggcttacccatctgcgggttcacccgttccattcaaccagattatttacaatggggag
cagcactatgacccccagactggcatcttctcctgccaggtaccaggtctctactacttc
tcctaccatatgcatgttaacggtgctaacgcattggtggcactgtacaaaaatggtgag
ccaatcatgttctcatacgatgagtacaacaagggcttcttggatcagttgtctggcagc
actgtccttatgctgaatgcccatgaccaagtctacattcaggtccctgatgaggagacc
aatggtgtcttcgctgccgacaatgttcactgctctttctctgggttcctgattgcctca
acgtga
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