KEGG   Salmo salar (Atlantic salmon): 106607980
Entry
106607980         CDS       T04363                                 
Symbol
cdc40
Name
(RefSeq) cell division cycle 40
  KO
K12816  pre-mRNA-processing factor 17
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106607980 (cdc40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sasa03041]
    106607980 (cdc40)
Spliceosome [BR:sasa03041]
 Complex C
  Other components
   Step II factors
    106607980 (cdc40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 EIF3I WDR55 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_SCAP WDR90_beta-prop_4th WD_LRWD1 PQQ_2 Beta-prop_Vps41
Other DBs
NCBI-GeneID: 106607980
NCBI-ProteinID: XP_014060996
UniProt: A0A1S3S9I3
LinkDB
Position
ssa06:65097126..65143159
AA seq 579 aa
MAATVESLVSYGTDSDSDNETKSNASPEKVDPDALAHLQPLKSGQTMSLALLNSAPEVAV
KEAVETGVHLDPSLKEVTYNPTYETMFAPEFGPVNPYRSQQMAAPRNMLSGYAEPAHVND
FMFEQQRRTFSTFGYALDPSVDTTSQNSSNSYIGAVDEAEKKKGLTVFEVGPKKHDKRKK
VQGGESDDIDNYLGPWAKYVDEKDGAKPSEEEQKELDEITAKRQKKGRNEEEAPAEEKTI
LHVKDAYDYQGRSYLHVPQDVGINLRTADIPDKCYLPKKQIHVWTGHTKGVSAIRLFPVS
GHLLLSCSMDCKIKLWEVYNERRCVRTFIGHSKAVRDICFNNTGTQYMSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDARTGEVVQEYDRHLGA
VNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTT
KLYHRIKAHDKVCISALWHPHETSKVITCGWDGLIKLWD
NT seq 1740 nt   +upstreamnt  +downstreamnt
atggctgccaccgtggagtccctcgtttcgtacgggaccgattcagattcagataatgag
acaaaatctaatgctagtcccgaaaaagttgaccctgatgccctagcacaccttcaaccg
ttgaaatctggacaaacaatgtctttggctctccttaattcagctcctgaggtcgccgta
aaggaggctgtggagactggtgtgcatctggacccatctctcaaagaggtcacctacaac
cccacatatgaaaccatgtttgcaccagagtttggtcctgtcaacccatatagaagtcaa
cagatggctgctcccaggaatatgctgtctggctatgcagagcctgctcacgtcaatgac
ttcatgtttgaacagcagaggaggaccttctccacctttggctatgctctggatccgtct
gtggacacaacaagccagaattcctccaatagctacatcggtgcagtggatgaggcagag
aaaaagaaagggttgactgtgtttgaggttggcccaaaaaaacatgacaagaggaaaaag
gtgcaaggaggtgaatcggatgacattgacaattacctcgggccctgggcgaaatacgtg
gacgaaaaggacggggccaaaccatcagaggaggaacagaaggagctggatgagatcaca
gccaagaggcagaagaagggaaggaatgaggaagaggctccggcggaggagaagaccatt
ctccatgttaaagacgcgtatgactaccaagggaggtcttacctccacgtaccccaagac
gtgggtattaacctgcgtactgcagacataccagacaagtgttacctgcccaagaaacag
atccacgtctggactggacacaccaagggggtcagtgctatccgtctgtttcctgtgtca
ggtcacctgctgctctcctgctctatggactgtaagatcaagttatgggaggtgtataat
gagaggaggtgcgtacggacgtttatcggccacagtaaagcagtgcgggatatctgcttc
aacaacactgggactcagtacatgagtgcagcctacgaccgctacctcaaactctgggac
acagagacaggccagtgcatctcccgcttcaccaaccggaaggtgccgtactgcgtcaag
ttcaacccagatgaggacaagcagaaccttttcgtggccggcatgtctgataagaagatc
gttcagtgggacgcaaggaccggggaggtggttcaggagtatgaccgtcacctgggcgcg
gtcaacaccatcacgttcgtggatgagaaccgccgttttgtcagcacgtcagacgacaag
tccctccgcgtgtgggagtgggacattcccgtggacttcaaatacatcgcagagcccagt
atgcactctatgcctgctgtaacgctttcacccaatggtaagtggctggcctgccagtcc
atggacaatcagatcctgatatttggagcccagaaccgtttccgtctgaacaagaagaag
atcttcaagggccacatggtggctggctacgcctgccaggtggacttctccccagacatg
agctatgtggtgtctggcgatgcggatgggaagctgaatatctgggactggaagaccacc
aagctgtaccaccggatcaaggcacacgataaggtgtgcatcagtgccttgtggcacccc
cacgagacctccaaggtcatcacctgtggctgggacggactgatcaagctctgggactag

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