Salmo salar (Atlantic salmon): 106607980
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Entry
106607980 CDS
T04363
Symbol
cdc40
Name
(RefSeq) cell division cycle 40
KO
K12816
pre-mRNA-processing factor 17
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106607980 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106607980 (cdc40)
Spliceosome [BR:
sasa03041
]
Complex C
Other components
Step II factors
106607980 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_SCAP
WDR90_beta-prop_4th
WD_LRWD1
PQQ_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
106607980
NCBI-ProteinID:
XP_014060996
UniProt:
A0A1S3S9I3
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Position
ssa06:65097126..65143159
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AA seq
579 aa
AA seq
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MAATVESLVSYGTDSDSDNETKSNASPEKVDPDALAHLQPLKSGQTMSLALLNSAPEVAV
KEAVETGVHLDPSLKEVTYNPTYETMFAPEFGPVNPYRSQQMAAPRNMLSGYAEPAHVND
FMFEQQRRTFSTFGYALDPSVDTTSQNSSNSYIGAVDEAEKKKGLTVFEVGPKKHDKRKK
VQGGESDDIDNYLGPWAKYVDEKDGAKPSEEEQKELDEITAKRQKKGRNEEEAPAEEKTI
LHVKDAYDYQGRSYLHVPQDVGINLRTADIPDKCYLPKKQIHVWTGHTKGVSAIRLFPVS
GHLLLSCSMDCKIKLWEVYNERRCVRTFIGHSKAVRDICFNNTGTQYMSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDARTGEVVQEYDRHLGA
VNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTT
KLYHRIKAHDKVCISALWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaccgtggagtccctcgtttcgtacgggaccgattcagattcagataatgag
acaaaatctaatgctagtcccgaaaaagttgaccctgatgccctagcacaccttcaaccg
ttgaaatctggacaaacaatgtctttggctctccttaattcagctcctgaggtcgccgta
aaggaggctgtggagactggtgtgcatctggacccatctctcaaagaggtcacctacaac
cccacatatgaaaccatgtttgcaccagagtttggtcctgtcaacccatatagaagtcaa
cagatggctgctcccaggaatatgctgtctggctatgcagagcctgctcacgtcaatgac
ttcatgtttgaacagcagaggaggaccttctccacctttggctatgctctggatccgtct
gtggacacaacaagccagaattcctccaatagctacatcggtgcagtggatgaggcagag
aaaaagaaagggttgactgtgtttgaggttggcccaaaaaaacatgacaagaggaaaaag
gtgcaaggaggtgaatcggatgacattgacaattacctcgggccctgggcgaaatacgtg
gacgaaaaggacggggccaaaccatcagaggaggaacagaaggagctggatgagatcaca
gccaagaggcagaagaagggaaggaatgaggaagaggctccggcggaggagaagaccatt
ctccatgttaaagacgcgtatgactaccaagggaggtcttacctccacgtaccccaagac
gtgggtattaacctgcgtactgcagacataccagacaagtgttacctgcccaagaaacag
atccacgtctggactggacacaccaagggggtcagtgctatccgtctgtttcctgtgtca
ggtcacctgctgctctcctgctctatggactgtaagatcaagttatgggaggtgtataat
gagaggaggtgcgtacggacgtttatcggccacagtaaagcagtgcgggatatctgcttc
aacaacactgggactcagtacatgagtgcagcctacgaccgctacctcaaactctgggac
acagagacaggccagtgcatctcccgcttcaccaaccggaaggtgccgtactgcgtcaag
ttcaacccagatgaggacaagcagaaccttttcgtggccggcatgtctgataagaagatc
gttcagtgggacgcaaggaccggggaggtggttcaggagtatgaccgtcacctgggcgcg
gtcaacaccatcacgttcgtggatgagaaccgccgttttgtcagcacgtcagacgacaag
tccctccgcgtgtgggagtgggacattcccgtggacttcaaatacatcgcagagcccagt
atgcactctatgcctgctgtaacgctttcacccaatggtaagtggctggcctgccagtcc
atggacaatcagatcctgatatttggagcccagaaccgtttccgtctgaacaagaagaag
atcttcaagggccacatggtggctggctacgcctgccaggtggacttctccccagacatg
agctatgtggtgtctggcgatgcggatgggaagctgaatatctgggactggaagaccacc
aagctgtaccaccggatcaaggcacacgataaggtgtgcatcagtgccttgtggcacccc
cacgagacctccaaggtcatcacctgtggctgggacggactgatcaagctctgggactag
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