Salmo salar (Atlantic salmon): 106608361
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Entry
106608361 CDS
T04363
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106608361
03016 Transfer RNA biogenesis [BR:
sasa03016
]
106608361
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106608361
Spliceosome [BR:
sasa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106608361
Transfer RNA biogenesis [BR:
sasa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
106608361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
106608361
NCBI-ProteinID:
XP_014061742
UniProt:
A0ABM3F1I4
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All DBs
Position
ssa06:complement(85571445..>85586267)
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AA seq
741 aa
AA seq
DB search
MAAFSELGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFTIPV
IQIVYETLKDQQEGKKGRTAVKTGGAVFNKWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKAITKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTMGCYLDLDNGHLSFSKNGTDLGLAFEIPALLKNQPFFASCVLKNAELKF
NFGGEEFKNPPKTGFIAVDQAAEGHVVKSSQTGSVKVSEVKTSSCGPKALIVEPSKELAE
QTLNNVNQCKRYVDNPKLRDLLIIGGVPARDQLAVLEQGVDIVVGTPGRLDDLISTGKLT
LSQVRFLVLDECDGLLTAGYTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKHDRSWERLDRKNHIQTDEVHAKDNTRPGA
NSSEMWSEAIKVLKGEYTIRAIREHNMDQAIIFCRTKIDCDNMEKYFIVQGGGPDRKGHQ
LSCVCLHGDRKPNERKTNLDRFKKQEVKFLICTDVAARGIDIHGVPYVINVTLPDEKQNY
VHRIGRVGRAERMGLAISLVAMEKEKVWYHTCANRGRGCYNTRLKEDGGCTIWYNEKELL
SDVEEHLKCTITQCEPDIKVPVDDFDGKVTYGKRRAAGGGNFSGHVAALAPTVQELANLE
REAQTSFLHLGYLPNQLFKAF
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaattgggcgttatgcctgaaatcgcacaagcagtcgaggagatg
gactggctcctccctacagacatccaggccgagtccattccgttgatcctgggaggagga
gacgtactcatggcggcagagactggaagcgggaagacgggggccttcactatcccagtg
atccagatagtgtatgagactctgaaggatcagcaggaggggaagaaggggagaacagct
gtgaagactggtggagcagtcttcaacaaatggcagatgaacccgtatgacagaagcaca
gctttcgccattggaccagacggactgtgttgtcaaagcagggagtttaaagaatggcat
ggctgtcgctctaccaaagccatcaccaaggggaagtactactatgaggtgtcatgtcat
gaccagggcctgtgtaggatcggctggtctaccagccaggcagctttggacttaggtact
gataaatacggctttggcttcggaggaacggggaagaaatctcacaacaaacagtttgac
agttatggagaggagttcaccatgcacgacaccatgggatgttatctggatctggacaac
ggacacctctccttctccaaaaacggtactgacctgggcttggcgtttgagatcccagct
cttctgaagaaccagcccttctttgcttcctgtgttctaaagaacgcagagctgaagttt
aactttgggggggaggagtttaagaatccccccaagacgggcttcatagcggtggaccaa
gctgctgagggacatgtggtcaaatccagccagacaggcagcgttaaggtgtcggaggta
aagacttcgtcctgtggtcccaaagctctgatcgttgagccgtctaaagagcttgctgaa
cagaccctcaacaacgttaaccagtgtaagagatatgtggacaatcccaagctcagagat
cttctgatcattggaggggtccctgctagggaccagctggctgtactggaacaaggggtg
gacatcgtggtcgggacaccaggtcgtctagatgacctcatctctacggggaaactcacc
ttgtctcaagtccgcttcctggtcctggatgagtgtgatgggctcctcactgccggctac
accgacttcatcatgagaatctacaaccagattcctcaagtcacctcggacggcaagaga
cttcaggtgatagtctgctcagccacgctccactccttcgacgtgaagaagttgtcagag
aagatcatgcacttccccacgtgggtggacctgaagggggaggattctgtccctgagacc
gtccatcacgtggtcgtccccgttaaccctaaacacgaccgcagctgggaacgcctagac
cgcaagaaccacatccagactgatgaggtccatgctaaagacaacaccagaccaggagcc
aacagttcagagatgtggtctgaggccatcaaggtcttgaagggggagtacaccatcaga
gccatcagggaacacaacatggaccaggccatcatcttctgtaggaccaagatagactgc
gacaacatggagaaatacttcatagtacagggaggaggtccagacagaaaaggccaccag
ctttcctgtgtctgtctccatggtgacaggaagcccaacgaacgcaagaccaatctggac
cgattcaagaaacaggaagtgaagttcttgatctgtacagacgtggcggccaggggcatc
gacatccatggagtcccctacgtgatcaacgtgactctgccagatgagaagcagaactat
gtccatcgcatcggcagagtggggagagcagagaggatggggttggccatctctctggtt
gccatggagaaggagaaggtgtggtatcatacctgtgctaaccgcggtagagggtgttac
aacaccaggctgaaggaggacggagggtgtaccatctggtacaatgagaaggagctgctg
tctgacgtagaagaacatttaaagtgcaccatcactcagtgtgaaccggacatcaaggtt
ccggtggacgactttgacgggaaggtgacctacggcaagcgcagagcggcaggaggtggt
aactttagtggtcacgtggctgcattggctcctacagttcaggaactggccaatctggag
agagaagctcagacatccttccttcatctgggttacctgcccaaccagctgttcaaagcc
ttctga
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