Salmo salar (Atlantic salmon): 106608676
Help
Entry
106608676 CDS
T04363
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03020
RNA polymerase
sasa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106608676
09124 Replication and repair
03420 Nucleotide excision repair
106608676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106608676
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106608676
Enzymes [BR:
sasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106608676
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106608676
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106608676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
106608676
NCBI-ProteinID:
XP_014062251
UniProt:
A0A1S3SD38
LinkDB
All DBs
Position
ssa07:11890194..11911958
Genome browser
AA seq
1865 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVDQQEHDSEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPK
FSRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWST
FRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
AIRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMG
HDVTRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAV
EFQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKE
DREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQDLSKKLV
IVNGEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTV
FLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPD
FDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LNHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLME
ASSHGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGM
FFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYTPT
SPNYSPTSPSYSPTSPSYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY
SPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTS
PKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDS
DEENN
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcacagaagggggaatcaag
taccccgagaccacagaaggaggacgtcctaaacttggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacgtgtgcaggcaacatgacagaatgcccg
ggccacttcggccacatagagctggcaaagcctgtcttccacgtgggcttcgtcaacaag
atcatgaaggtcctccgatgtgtctgctactcgtgctccaagcttctggtcgacacgaat
aacccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtacgacctgtgtaaaggcaagaacatctgcgagggcggagaggagatggacaac
aagtttggagtggaccagcaggagcacgacagtgaggacatcactaaggagaagggccac
ggtggctgtgggcgctaccagccgcgtatccgccggtcgggcctggagctgtacgctgag
tggaagcatgtgaacgaggactcacaggagaagaagatcctgctgagcccagagcgcgtc
tacgagatcttcaagcgtatctcggacgaggaggatgtcatcctgggcttggaccccaag
ttctcccggcccgagtggatgatcgtcacagtactccccgtgccgccactggctgtccgg
cccgccgtcgtcatgcagggctctgctcgtaaccaggacgacttgacacacaagctggcc
gacatcgtcaagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccac
gtcatcgctgaggacgtgaagctgctgcagttccacgtggccaccatggtggacaatgag
ctgccaggcctacccagggcgatgcaaaaatcgggccgcccacttaaatccctcaaacag
cgtctgaaagggaaggaggggcgagtccgaggtaacctgatggggaaacgtgtggacttc
tccgcccgaaccgtcatcacccccgaccccaacctccagatcgaccaagtgggcgtcccg
cgctccatcgcagccaacatgaccttccctgaaatcgtcacaccctttaacattgacagg
ttacaggagctggtgcgcagaggcaacagccaatatcccggagccaaatatatcatccgc
gacaacggggacagaatcgacctgcggtttcaccccaaaccaagtgaccttcacctccag
attggctacaaggtggaaagacatatgtgcgatggtgacatcattatcttcaacagacag
cccacgctacataaaatgtctatgatggggcacagagtccgaatcttgccctggtccacc
tttcgaatgaacctcagtgtaaccaccccgtacaatgctgactttgacggggacgagatg
aacctgcatctcccccagtccctggagacgagagctgagatccaggagcttgccatggtg
cctcggatgatcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggacacc
ctcacagcggtgcgcaagttcaccaagagggatgtcttcctagagcggggcgatgtgatg
aacctcctgatgttcctgtccacgtgggacggcaaggtgccccagccagccatcctgaag
ccccggccgctctggacgggcaagcagatcttcagcctcatcatcccgggccacatcaac
gccatccgaacacacagcacccacccagacgaggaggacagtgggccctacaaacacatc
tcccctggggacaccaaggtgatagtggagaatggagagctgatcatgggcatcctgtgt
aagaagtccctgggtacctctgctggctccctggtccacatctgcttcctggagatgggc
cacgacgtcacccgcctcttctactccaacatccagacggtggtgaataactggctgctc
attgagggtgcctcgattggtattggtgattctattgctgatgcaaagacttaccttgac
attcagaacaccatcaagaaggccaagcaggatgtaatagaggtcattgagaaggcccac
aacaacgagttggagcccacccctggtaacacgctgaggcagacctttgagaaccaggtg
aatcgcatcctgaacgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtct
gagtacaacaacttcaagtccatggtggtggccggctccaaaggctccaagattaacatc
tctcaggttattgctgtggtggggcagcagaacgtggagggtaaacgtatcccctttggc
ttcaagcaccgcacgctcccccacttcatcaaggatgactacggccctgagagcagaggc
ttcgtggagaactcgtacctggctggcctcacgcccacggagttctttttccacgccatg
ggaggcagagaggggcttattgacacggctgtgaagaccgccgaaactggttacatccag
cgtcgtctgatcaagtccatggagtctgtgatggtgaagtacgacgccaccgtgaggaac
tccatcaaccaggtggtgcagctacgctacggagaggacggcctggccggggaggctgtg
gagttccagaacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagg
tttgactgcaccaatgagcgggcgctgcggcgcaccctacaggaggacgtggtgaaggac
gtgatgaccaacgcccaggtgcagagtgccctggagagagagtatgaaaagatgaaggag
gacagagagattctgagggccatcttccccactggggacagcaaggtggtgcttccatgc
aacctggccaggatgatctggaacgcccagaagatcttcaggatcaacccccgcaccccc
acagacctcaaccccctacgagtggtagagggtgtccaagacctgagtaagaagctggtg
attgtgaacggcgaggaccacctgagcagacaggcccagcagaacgccaccctcctcttc
aacatccacctgcgctccacgctcagctcccgacgcatgacagacgaattccggctgagc
actgaggcttacgactggctactgggggagatcgagagcaagttcaaccagtctattgcc
cacccgggtgagatggtgggggcgttagccgcccagtcgctgggagaacccgccacccag
atgaccctgaacaccttccactacgctggtgtgtcggccaagaacgtcactctgggcgtg
ccgcgtctcaaggagttgatcaacatctccaagaggcccaagaccccctccctcaccgtg
ttcctgctgggtcaggcggcccgcgatgccgagcgggccaaggatatcctctgtcggctg
gaacacaccaccctcagaaaggtgacggccaacacagccatctactacgaccctaacccc
cagagcacggtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcctgac
ttcgacgtgactcgcatctccccctggctcctccgcatcgagctcgaccgcaaacacatg
actgaccgcaagctgaccatggagcagatcgcagagaagatcaatgcaggtttcggagat
gatctgaactgtatcttcaatgacgacaacgccgagaagctggtcttgcgaattcgcatc
atgaacagcgacgagaacaagttccatgaggatgaggaagtggtggacaagatggacgac
gacgtgttcctgaggtgcatcgagtccaacatgctgacggacatgacactgcagggcatc
gagcagatcagcaaggtgtacatgcacttgccccagacagacaacaagaagaagatcatc
attacagaggagggagagttcaaggccctgcaggagtggatcctggagacagatggcgtg
ggactgatgagggtcctcagtgagaaggacgtggaccctgtcaggaccacctccaacgac
attgtagagatcttcacggtgctgggtatcgaggctgtacgtaaggcgctggagagggag
ttgaaccacgtcatctcctttgatggttcctacgtcaactaccgccacttgtcgttgctt
tgcgacaccatgacgtgccgcggtcacctgatggctatcacacgtcacggcatcaacaga
caggacacgggacctctcatgaagtgctcctttgaggagacggtggacgtgctgatggag
gcgtcatcccacggggagagtgaccctatgaagggtgtgtctgagaacattatgctgggc
cagctggccccctgcgggacgggctgctttgacctgctgctggacgctgagaagtgcaaa
tacggcatggagatccccaccaacatccctggtatcagcgtggctggacccaccggaatg
ttctttggctcggcgcccagccccatgagtggcatgtccccagccatgaccccctggaac
actggagccacccccgcctatggtgcctggtcccccagcattggtagcgggatgactccc
ggagcagcaggcttctctcccagcgcagcatccgacgccagtggcttctctccgggctac
tccccggcctggtcccctacccctggatctcctgggtccccggggccagccagcccctac
atcccctctccaggaggtgcgatgtctcccaactactcgcccacctccccggcctacgag
ccccgctctcctgggggatacaccccccaaagcccaggctactccccaacctccccctcg
tactccccaacctccccctcgtactccccaacctcccctagttactcccccacgtccccc
tcgtactctccaacctcccctagttactcccccacgtccccctcttacagccctacgtcc
ccaagctacagccctacgtccccaagctactcccccacctctccaaactacacccccacc
agccccaactactccccgacctccccctcttattcccccacctccccgtcctactctccc
tccagcccgcgcttcaccccccaatcgcccacctacacccccagttctccctcttacagc
cccagctcgccctcctactcacccacctcgcccaaatacacccctacgtccccttcttac
tcccccagctctccagagtacacccccacctcccccaaatactcccccacctcgcccaag
tactctccgacctctcccaaatactcacccacctccccaacttactcaccgacgacgccc
aagtacagccccacttcgcccacctactcgcccacctcgcccacctacacccccaccagc
cccaagtactcccctacctccccaacatactctccaacctcacccaaatactctcccacc
tcccccacctactcaccaactagccccaaagggtccacctacagccccctgtctccgggc
tacagcaacccctcgcccagcttcaccctcaccagcccggccatcagcccagacgacagt
gacgaggaaaacaactga
DBGET
integrated database retrieval system
