Salmo salar (Atlantic salmon): 106608847
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Entry
106608847 CDS
T04363
Name
(RefSeq) low-density lipoprotein receptor-related protein 10-like
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106608847
Membrane trafficking [BR:
sasa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
106608847
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
CUB
PBSX_XtrA
Motif
Other DBs
NCBI-GeneID:
106608847
NCBI-ProteinID:
XP_014062494
UniProt:
A0A1S3SDS4
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Position
ssa07:complement(20638509..20653618)
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AA seq
1074 aa
AA seq
DB search
MTVSFNLCVINILFVTAYSSLELVSSTGFFSLPAHCGRSPQVLEAARGEIRSFVHHSSSY
RLRPFYCSWIIKAHVGEPVILSFSQFSTRCKKEWVSVTSSAGKPITLCGSDLPKPMELMG
GNITVTHHFLPHLLPVSAFRLGYVRDSGDCTGVDFECLGGRCLPLSWRCNGRVECLGEGV
GLGIDEQDCDGAMKILNLDPEHGKTVVATATPESYRARETGREKNRGSNSRGRDWETVGK
APGELEKEEEETEKQVDEDGDHTKEKEPANPIYDFWQFQPRGLPSHQPRRAHPSVTRAPI
EWPCGGLLQTFYGTFAPPSIRGPPLYCVWTLDPQGSRPLKLDLRLLELGPGDTVTITDRQ
QGTGELLKAITSASNYKALRVESLTGLLSLTYRTLPGSEGLGFNATYRVGGYCPPWEGKC
GGAAGGCYTQEQKCDGHWDCPETGRDEAGCRGCPRDQFACGVAGQRALLAGHSFLGRPVC
FPAKERCNYQLYCSDGSDERDCSICQPGTFHCDSDRCVFESWRCDGQLDCKDGTDELNCT
VTLPPKVITCGGLLQTFYGTFAPPSIRGPPLFCVWTLDPQDSRPLKLDLRLLELGPGDTV
TITDRQQGTGELIKTITNASNYKAIQVESRTGLLSLTYRTLPGSEGLGFNATYRVGGYCP
PWEGKCGGAAGGCYTQEQKCDGHWDCPETGRDEAGCRGCPRDQFACGVAGQRALLAGHSF
LGRPVCFPAKERCNYQLYCSDGSDERDCSICQPGTFHCDSDRCVFESWRCDGQVDCKDGT
DELNCTVTLPRKVITAATVGSLVCGLLLVIAMGCTCKLYSLRTREYSMFAPISRQEAALI
QQQAPPSYGQLIAQGVIPPVEDFPTENPNESSSLTLRGILQLLRQDTANTQRRRRRPRFV
RRAVRRMRRWGLIPRPASRPSQPSSSAPQQTDPTSTGVEPSQSTPATSSLAVEAVNLPLP
QKLGLLPQTVQHPPIPPPPASLPPPLVSIPATPQSFPVAAPPTSSSPSLASLFHSLGRGI
SRFRASPFSPPPTNSLPLSTSPSFSSSSEDEVLLIPLSEDMTSEDDVPLLTLDP
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgactgtctctttcaacctttgtgtcatcaacattttgtttgtaactgcctacagcagc
ctggagctggtctccagtactggtttcttctctctcccagctcattgtggacgatctccc
caagtcctggaggctgcgagaggagagatcagaagctttgtgcaccacagctcgtcctac
cgccttcggcccttctactgtagttggattatcaaggcacatgtaggagagcctgttatt
ctcagtttctcccagttttccacacggtgtaagaaggaatgggtctcggtgacatcatcg
gctggcaagcccattaccctctgtggttccgacctgccaaaacccatggagttgatgggg
ggaaacattacagtgacgcaccacttcctgccacacttattgcctgtgtctgcgttccgc
ctgggctatgtcagagactccggtgactgtacgggtgtggactttgagtgtttgggcggg
cgctgcctgcccctgtcgtggcgttgtaacggccgggtggagtgcctgggtgaaggggtg
ggcctgggcatagacgagcaagactgtgatggagcaatgaaaatcctgaacctggatcct
gagcatggcaaaacagtggtggccaccgccacgccagagtcctacagggcgcgggagaca
ggaagagagaagaacagggggagtaacagcagagggagggattgggaaacagtagggaag
gcaccgggcgagctggagaaagaggaggaggagacagagaagcaagtagacgaggatggg
gaccacaccaaggaaaaggagccagccaatcctatatatgacttctggcagttccagcct
cgtggactccccagccaccagcctcgcagagcccaccccagtgtgacccgggcccccatt
gagtggccttgcgggggcctgctccagaccttctatgggacgttcgcccctccttccatc
aggggcccccctctgtactgtgtgtggaccctggacccccagggctctaggcctctgaag
ctggacctgcggctgctggagctggggcctggagacacggtcaccatcactgacagacag
cagggcaccggggaactcctcaaagctatcaccagcgcgtccaattacaaggccctccgg
gtcgagtccctgaccggcctcctctccctgacctatcgtacgctccccggctctgagggg
ctgggcttcaacgccacctaccgtgtcgggggctactgccccccctgggaaggtaaatgt
gggggtgccgcgggaggctgctacacccaggaacagaagtgtgacgggcactgggactgt
cccgagacgggacgtgacgaagcagggtgcaggggatgtccccgggaccagtttgcctgt
ggagtggctgggcagagggcgctgctggcggggcatagcttcctagggcgtccggtgtgt
ttccctgccaaggagaggtgtaattaccagctgtactgttctgatgggagcgatgagagg
gactgttctatatgtcaacctgggaccttccactgcgacagtgacaggtgtgtgtttgag
agctggcgctgtgacggccagctggactgtaaggacgggacagacgagctgaactgcacc
gtgaccctgcctcccaaggtcatcacctgcgggggcctcctccagaccttctatgggacg
ttcgcccctccttccatcaggggcccccctctgttctgtgtgtggaccctggacccccag
gactctaggcctctgaagctggacctgcggctgctggagctggggcctggagacacggtc
accatcactgacagacagcagggcaccggggaacttatcaaaactatcactaatgcgtcc
aattacaaggccatccaggtcgagtcccgcaccggcctcctctccctgacctatcgtacg
ctccccggctctgaggggctgggcttcaacgccacctaccgtgtcgggggctactgcccc
ccctgggaaggtaaatgtgggggtgccgcgggaggctgctacacccaggaacagaagtgt
gacgggcactgggactgtcccgagacgggacgtgacgaagcagggtgcaggggatgtccc
cgggaccagtttgcctgtggagtggctgggcagagggcgctgctggcggggcatagcttc
ctaggacgtccggtgtgtttccctgccaaggagaggtgtaattaccagctgtactgttct
gatgggagcgatgagagagactgttctatatgtcaacctgggaccttccactgcgacagt
gacaggtgtgtgtttgagagctggcgctgtgacggccaggtggactgtaaggacgggaca
gacgagctgaactgcaccgtgaccctgcctcggaaggtcatcaccgcggcaaccgttggc
agcctggtctgcgggctgttgctggtcatcgctatgggttgcacctgcaagctctactca
ctgcgcactcgagaatacagtatgtttgctccaatcagccgccaagaggcggcgctgatc
cagcagcaggctcctccctcctacggtcagctgattgcccagggcgtcatccctccagtg
gaggacttccccacagagaaccccaacgagtcttcctctcttactctgagaggtatcctc
cagctcctcagacaggacaccgccaacactcaacgtcgccgtcgccggccccgattcgtc
cgccgggctgtccgtcgcatgcggaggtggggcttaatccctagacccgcctccaggccc
tcccagccttccagttctgccccccagcagacagatcccacctctactggtgtagagccc
agtcaatcaactcccgcaacttcctcattggctgtggaagccgtcaatctgccattgcca
cagaaactaggcttgctccctcagacggtgcagcacccaccaataccgccgcctcccgcc
tccctccctccacccctcgtctctatcccagccaccccccagagcttccctgtggctgcc
cctcccacctccagtagcccctccctagcctcgctcttccactctctggggcgcggtatc
tctcgcttccgcgcctccccgttctcccccccccccaccaactccctgcccctctccaca
tccccctctttctcctcctcttcggaggatgaggtgctgcttatccccctctcggaggac
atgacctcggaggatgacgtccccctgctaacccttgacccctga
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