Salmo salar (Atlantic salmon): 106608850
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Entry
106608850 CDS
T04363
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106608850
09122 Translation
03013 Nucleocytoplasmic transport
106608850
03015 mRNA surveillance pathway
106608850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106608850
03041 Spliceosome [BR:
sasa03041
]
106608850
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106608850
Spliceosome [BR:
sasa03041
]
Complex C
Other components
EJC/TREX
106608850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
106608850
NCBI-ProteinID:
XP_014062498
UniProt:
A0A1S3SDU6
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All DBs
Position
ssa07:complement(20701553..20728371)
Genome browser
AA seq
1608 aa
AA seq
DB search
MADEDVTLNGKPLQSLRVADLKAALEQRCLPKSGAKNTLIKRLKGALMLENLQRTSTPHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEADESPAGPEEEEHTEDGN
DSDSYNPDKHRPMPSQPPLTRAEEEGGGGGGPMMMGHQGQGMMMGKGQGMMGQGMMSRRP
DFGPSSVPQESPDAPGGPGSWMQQRPSLQHGLHHEEPTTPSPPRAVASLSVRVLGDPERQ
GLPPSMPPRAQTQEKEGTAPADDDRPAHSVLHLSRSARAAAGSNRVQEDCDDDDDSSEED
EDEWGPAAKRGGGRGLAPPPQPQQPSPSVPAARERSRRKLQPPQHIPPQQVVHQPPMQLR
QPTPPPSPPPELSFPLPDTPKQSPPDMDEEPEGAGAGVSVRLPPGGLQRQDSDSSSRSSS
PEPRAKRRPGPLSLLARKMASEGAYGKRGEGAPADGQTGPRGEASRPGDGVGSSPGAGAG
PGAEVVMFPGAAITHTGGSSTGHTGFVTVPEVPAPVVMFESGAQSHPLPLLSVAAVPSIN
LTTEPQGPSGETAQKKTEKETKQAEEEERKMKQVEKEEESHLPPRQRGRDLTLPSASSQF
GSGGSEEPVTDQGDTPKKSPFGRDKPLSSTPGSAMTTTTSPPAIAPKKPRMFSDTSSGSM
TSPPKPVQQGSVVVTSPGELPEPQVVLVSGAQQHTDDTMEVTALNKASVEKPGWKAGGDD
EKMKERASLAEKERASLAEKERASLAEKERASQAEKERASQAEKERASQAEKERASQAEK
ERASQAEKERASQAEKERASQAEKERASQAEKERASQAEKERASLAEKERASQAEKERAS
QAEKERASQAEKERASQAEKERASQAEKGTPKPGETRRRGPEETVEVEPMGPVLPPSYPG
KREDERKGKEDERKGKEDERKGKEDERRRKEDERKKEAERGRRGERARHRRSSPSSGGDS
SSSDSDSGSSSSRSSGSTSSRDKKKKTGTGKGRGDEKRRLYKGGEKKQSAREVKQSSLSE
PSGPMEVERPDPVQTQPTPVGDPQNSEGCMEESTTPKAFAARKISLTTGSKSSPEGGGGA
AAGGEAESGTAAGRKRRWGSSTAVNAKKPSISITTDSLKSLIPDIKPSQDAVVDLHPDDI
QLSGDEDTTREDQGLDKGLKIRRTVTQVVPSENQENGQGERDEEEEEEEEEKKQEHDRER
TQKEKRKDSYSEDTMESQSSATHDTDAKKVTPSDTLVRRSISQQKSGVSVTIDDPVRTAK
QPSPPRGKVSNIVHVCNLVRPFTLGQLKELLNRTGSVVEDGFWIDKIKSHCYVTYSSTEE
AVATRAALHGVKWPQSNPKVLSVDFCEQNELDFHRGLLTVDPREEHRPQPGVGPGGPKVR
PGVLPPLMEGRGDRGVVGGVRDQWAEREREMERRERTRAEREWDRDKVRDFGGKPGEERE
RGRRSRSLDRERRRKERDGKEKKTDKKDEPPAKLLDDLFNKTKAAPCIYWLPLTEEQANQ
RGKEREERQKERERRRKEQQEEEDKKREEERKERIKSREKEGGAAVSTGSVSVRGSEGDR
DRERERGREREGEKRRDSGGFRPRGPDTKPSAGFRRSRSRSNPRDKRR
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctgaatggtaaacctctacaatcgctccgtgtggcagac
ttgaaagccgctttggagcaacgatgcctccctaaaagcggggcgaaaaatacactcatt
aagcgactgaaaggggctctaatgttggagaatcttcagaggacctccactccccatatt
ggcctccagcccaactcccagattggggaggagatgagccaaaacagcttcataaagcag
tacctggctcagcagcaggagctcctacgccagaggctagagagagaggccagggaggca
gccgaggctgatgaaagcccagcgggccccgaggaggaggagcacacagaggatggcaac
gacagcgattcctataaccctgacaagcatcgccccatgccctcccagcccccactgacc
cgggctgaggaagagggaggaggtggaggagggccaatgatgatggggcaccagggccaa
ggaatgatgatggggaaaggtcaggggatgatgggccaagggatgatgtctcgcagacca
gactttggcccaagctctgtgcctcaggagtctcctgacgcccctggaggtcctggatcc
tggatgcagcagcgtccctccctccaacatggcctccaccacgaggagcccaccaccccc
tccccgccccgagctgtggcctcactgtcggtgcgcgtcctaggggaccctgagcgccag
ggcctgcccccgtccatgcccccccgcgcccagacccaggagaaggaaggcaccgccccg
gcggatgacgaccgacccgcccactctgtgctccacctcagccgctctgcccgggcagca
gctggcagtaaccgtgtccaggaagactgtgacgatgatgatgacagcagtgaggaggat
gaagatgagtggggacctgcggcgaagagaggtggcggaagagggttagcccctcccccc
cagccccagcagccttcccccagcgtcccagcggcccgagagagatccagacgcaagctc
cagcctccgcaacacatcccccctcagcaggtagtacaccagccccccatgcagctccgc
cagcccaccccgcccccctctccaccaccagagctctccttccccctccccgacaccccc
aaacagagcccgcctgacatggatgaggagccagaaggagcaggggctggggtgtccgtc
cgcctccctccaggtggcctccagaggcaggactctgactccagctcccgatccagcagc
ccagagccccgagccaagcgccgacccggacccctctccttgctggcccgcaagatggcg
tccgagggagcttacgggaagagaggcgagggtgcgccggcggacggccagacaggtcct
cgaggggaggcttccagaccaggagatggagttggcagcagcccaggagctggagcagga
ccgggggctgaggtggtcatgttccctggggctgctatcacccacacaggaggcagcagc
acagggcacacgggattcgtcactgtacctgaggtccctgcaccagtcgttatgtttgaa
tcaggagcccagtcccatcctctccctctgctgtctgtggcagctgtccccagcataaac
ctcaccaccgagccccagggtccatctggagagacggcacagaagaagacagagaaagaa
acaaagcaggcggaggaagaggagaggaagatgaagcaggtggagaaggaggaggagagt
cacctgccgccacggcagcgtggacgtgacttgacgcttccatctgcgtcttcacagttt
gggtctggggggtcagaggagcctgtgacggaccagggagacaccccgaaaaagtcaccc
ttcggcagggacaaacccctctcctccactcccggctcagccatgacgaccaccacctcc
ccgcctgccatcgcccccaagaagccccgcatgttctccgacacctcctccggctccatg
acctcccctcccaaacctgtgcagcaggggtcagtggtggtgacctctccaggggaactc
cctgaaccccaggtagtccttgtctcaggggcccagcagcacacagacgacaccatggag
gtcaccgcactgaacaaggcgtctgtggagaagcctggatggaaagctggaggagacgat
gagaagatgaaggagcgtgccagcctggcggagaaggagcgtgccagcctggcggagaag
gagcgtgccagcctggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagc
caggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcggagaag
gagcgtgccagccaggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagc
caggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcggagaag
gagcgtgccagcctggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagc
caggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcggagaag
gagcgtgccagccaggcggagaaggggactcctaaacctggggagaccaggagaagggga
cctgaagagactgttgaggttgagcccatgggacctgttctacccccttcttacccaggt
aagagagaagatgagaggaaggggaaggaagatgagaggaaggggaaggaagatgagagg
aaggggaaggaagatgagaggaggaggaaggaagatgagaggaagaaggaagcagagcga
ggcaggcgtggggagagggcgaggcacaggaggtcatctccctctagtggtggcgactct
tcatcctccgactcggactctgggtcctcttcgtcacgttcctctggctccacctcctcc
cgggacaaaaaaaagaagactggcacaggaaaaggaagaggggatgaaaagagaagactg
tacaaaggaggagagaagaaacaatctgccagggaggtaaagcagtcttccttgtcagag
ccatctggccctatggaggtggagaggccagacccagtccagacccagcccacccctgtc
ggggacccacagaacagtgagggctgcatggaggagagcaccactcctaaagcgttcgct
gcacgcaagatctccttgaccacaggcagtaagtcgtctccagagggaggaggaggagca
gcagcagggggggaggcagagtccgggaccgccgctgggaggaagaggagatggggatcc
agcacggccgtcaacgccaagaaaccatccatcagcatcaccacagactcactcaagtct
ctgatcccagacatcaagcccagtcaggatgctgtggtggatctccaccctgatgacatc
cagttgtctggggacgaggacaccaccagggaggaccagggtctggacaagggcctcaag
atcagacgcactgtcacacaggtggtcccaagtgaaaaccaggagaatggccagggagaa
agagatgaggaggaggaagaggaggaggaggagaaaaaacaggagcatgacagagagagg
acacagaaagagaagaggaaggacagctactcagaagacaccatggagtctcagtcctcc
gctacacacgacaccgacgctaagaaagtcactcccagtgatacgctggtgcgtcgctcc
atcagccagcagaagtcaggtgtgtctgtcaccatcgacgacccggttcgcaccgccaaa
cagccctctccgcccagaggcaaagtctccaacatcgtccacgtctgtaacctggtgcga
cctttcaccctgggtcagctgaaggagctgctgaacaggacaggctcagtggtagaggat
ggcttctggatcgacaagatcaagtctcactgctacgtcacttactccagcacagaggag
gctgtggccacacgagctgctctccacggagtgaagtggccccaaagcaaccctaaagtc
ctcagtgtggacttctgtgagcagaacgagctggactttcacagaggcctactgaccgtg
gatcccagagaggagcaccgcccccagcctggtgtgggtcctggaggtcccaaagtccga
ccgggcgtgctgccccctctgatggaagggcgcggggaccgcggcgtggtcggaggggtg
cgggaccagtgggcggagagagagagggagatggaacgccgggagaggaccagagcggaa
cgtgagtgggaccgggacaaggttcgagacttcggaggcaaaccaggggaggagagggag
agagggaggagatctcgctccctggatagagagagaaggcggaaggagagggacggcaag
gagaagaagaccgacaaaaaggatgagcctcctgccaaattactagacgacctcttcaat
aagaccaaagcagctccctgtatatactggctccccctcactgaagaacaggcaaaccag
aggggaaaagaacgggaagagcgacagaaagaacgagagaggaggcggaaagaacagcag
gaggaggaggacaagaagcgagaggaggagagaaaggagagaattaaaagcagagagaag
gagggcggagctgcggtaagcactggaagtgtgagtgtccggggatctgagggagaccgg
gatagagagagggagcgagggagggagagagagggggagaagaggagggacagtggtgga
ttcagacccagaggtcctgatactaaaccctctgctgggttccgacgctcccgtagccgt
agcaacccccgagacaaacgccgttga
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integrated database retrieval system
