Salmo salar (Atlantic salmon): 106608922
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Entry
106608922 CDS
T04363
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106608922
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106608922
09142 Cell motility
04820 Cytoskeleton in muscle cells
106608922
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106608922
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106608922
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106608922
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106608922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106608922
NCBI-ProteinID:
XP_014062615
UniProt:
A0A1S3SE43
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All DBs
Position
ssa07:complement(22108202..22192990)
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AA seq
1689 aa
AA seq
DB search
MNKNLKSLRNLAVGLVLVTLCIVVQESESAACHGCAAGSKCDCSGVKGGKGERGFPGLQG
QPGVPGFPGPEGPIGGRGEKGSDGPSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PRGTAGCNGTKGERGFPGSPGFPGLEGRSGPPGLPGQKGDPGDVISNDRFGQKGGVGLPG
LPGVPGNPGPAGLSGPIGPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLQGP
PGPPGQVGEQKRPTELEIQRGEKGDQGLPGPAGDPGYPGPPGVSGGSKGEKGEPGEAGKR
GKPGKDGDPGPAGFPGSKGDPGGPGLPGRDGDRGDKGDRGYPGPPGVVINGQTGARVGPK
GEPGFPGSSGRKGDRGQPGLSGPPGQPGTPGTGGVGQPGSPGFPGERGQKGDEGQPGISR
PGPPGRNGAPGLQGPPGPPGAAGVSTGGGNCLGGAPGLPGQQGDRGFQGETGQKGDKGET
CVNCFSRGNSIPGAPGPPGPPGFPGGPGGPGVKGDRGYPGGPGPSGSSGLPGPQGAPGFP
GEKGDPGEAIAVDGVRGDKGDTGFPGPPGLPGLDGGPGRNGVPGAPGPKGTSGSLLVKGE
RGPPGEPGLQGLPGDRGVPGSPGFGPQGPPGEKGVQGVSGRTGTPGAPGTKGEPGQTIAE
KGLPGPRGQDGDPGLPGNPGNPGGPGQPGFPGLPGAKGDPGLSGIGLPGPPGAKGFPGSS
GVPGSPGGPGRPGVDGLPGEPGGPGAKGEPGFGLPGPQGPPGFPGPKGLPGPKGDSGFPG
NPGSPGRSGFDGGPGAKGDSGINGIPGARGPPGSPSIGSQGIPGPIGPPGPMGSPGYSGA
NGEKGDPGPPGLDIPGLPGDRGSPGFPGSPGVVGPQGNPGGPGRDGLPGLPGGKGDMGVM
GAPGPLGSPGNPGAPGFPGPKGDDGFPGRPGGPGGSGLKGDRGEPGIAGLPGPSIPPQEL
KGGKGEPGAPGLGGLPGQKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGPGSPGA
PGAKGNMGEMGFPGPTGAKGTPGQSGRSGGPGSSGAPGFPGAKGEPGSPGFGSPGATGPK
GEPGQSGFPGQNGVKGNPGTPGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGIPGNP
GLSGPPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGSPGLPGLPG
AKGDLGAPGSSGSPGFPGQKGEMGFPGLPGSPGSVGPPGAPGVALQGPKGNAGPPGPPGR
GGPEGPPGPPGSEGPRGPVGSGGTKGEKGIPGIPGSPGFPGAKGEFGSPGFPGNAGLPGA
KGLKGDIGLPGVPGFPGPKGDSGIPGSSGLPGDPGDVGPAGPPGDPGFAPAPIVLKGERG
PPGPSGLPGGRGATGPPGLEGLSGQPGQPGDPGPEGPPGFSGASGRKGDPGPAGQPGERG
YPGPPGSDGLQGPPGPSGSASVAHGFLITRHSQGEDVPLCPEGTSLIYDGYSLLYVQGNE
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPTPMPMTMAPITGEG
IKPYISRCAVCEAPAMVIAVHSQTIQIPTCPSYWEPLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRVS
RCVVCMKRT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacttgaagagtctgcgaaatctcgcggtggggttggtgctcgtaaccctg
tgtatcgtggtccaggagtcggaatcagcggcgtgtcatggctgtgcagcgggatcaaag
tgtgactgcagcggagtaaaaggaggcaagggcgagaggggtttcccaggactacagggt
cagccaggcgtaccagggttccccggacctgaggggccaatcggaggcaggggagagaag
ggtagtgacggaccttcagggccatcaggtccaaaaggaattaggggacctcctggactg
cccggattcccaggaacaccaggaattccaggtctcccaggacaggacgggcccccgggc
ccaagaggaactgcaggctgcaacggaactaagggtgagagaggattccctggaagtcca
gggttccccggcctggaggggcgatcgggtccacctggtttgccaggacaaaagggagac
ccaggtgatgtcatctcaaatgaccgctttggacagaaaggaggtgtaggtttacctggc
ttgcctggagttcctggtaacccaggccctgcaggattgtcaggccctatcggtccacct
ggccccagaggttatgagggtcgttccgggcctcctggtcctcccggtcctaagggtaac
atgggattgaacttccaaggtcccaaaggagataagggggatccaggtctgcaggggcct
cccggtccaccaggacaggtcggggagcagaagagacccaccgagttagagatccagaga
ggagagaaaggtgatcaaggtttacctggtccagctggtgatcctggctatcctggtccc
cctggtgtatctggaggttcgaagggagagaaaggagagcctggagaagcaggcaaacgc
ggcaaaccggggaaagatggcgacccgggtcctgctggattccctggtagtaaaggagac
ccaggcggcccaggtctgccaggtcgggatggggacaggggggacaaaggtgaccgtgga
taccctggacctccgggcgtggtgattaatggtcagacaggagcacgtgtggggccaaaa
ggagagcctggtttccccgggtcatcaggaaggaaaggagacagaggacaacctggtctc
tcaggtcctccaggacaaccaggaaccccaggtaccggaggtgtaggccaacccggttcc
ccaggcttcccaggagagaggggccagaagggagacgagggccagccaggcatctcccgc
cctgggcccccaggacgaaatggggcccctgggcttcagggaccaccaggccctcccggg
gccgcaggggtctccacagggggcggtaactgtttaggaggggcccccgggttaccagga
caacaaggagacagagggtttcaaggagagaccggacagaaaggtgacaagggagaaacc
tgtgtgaactgtttctcacgtgggaactccatccctggagcaccaggccctcctggacct
cctgggttcccaggtggaccaggaggaccaggggttaaaggtgacagaggatatccaggt
ggcccagggccctcaggttcttctggtttgcctggtccccagggtgcacctggtttccca
ggagagaagggtgacccaggtgaggctattgctgtggatggggtgaggggcgacaaggga
gacacagggttccccggaccccctggcctgcctggtctggacggaggacctggtcgcaat
ggagttcctggagctcctggacccaaaggaacatctggctctctgttagtgaagggtgag
cgagggcctccgggtgagcccggtctgcagggtctcccaggtgacaggggtgtccccgga
tccccaggcttcggcccccaggggccccctggagagaagggtgtgcagggcgtctcaggg
agaacgggaacacctggagcaccaggcactaaaggtgagccgggtcaaacgatagcagag
aagggactcccaggacccaggggacaggatggagacccgggtcttcctggaaacccaggc
aaccccggcgggccaggacagcccggtttccccggcttaccaggtgccaagggcgacccc
ggcctctccggcattggactgccaggaccccccggcgctaaaggattcccaggctcatct
ggtgtgccaggtagtcccggaggtccaggaagaccaggagtggacggcctccccggtgag
ccaggtggacctggagctaagggagagccaggattcgggctgccaggtccccagggccct
ccaggcttccctggacccaaaggattacctggacccaaaggagactccggtttccccggc
aaccccggctcgcccggacgttccggcttcgacggtggccctggtgccaaaggtgactct
ggtatcaatggtatacccggagcccgtggacctccaggttcgccctccatcggctctcag
ggcatccccggccccattggacccccaggacccatgggctctccagggtactcaggtgcc
aacggagagaagggagaccccggtcctcctggcctggacattccagggttgccaggcgac
agaggaagtcccggtttccccggcagccccggggtagttggaccacagggtaaccctggc
ggccctggccgagacggactgcctggcctgcctggtggtaaaggagacatgggtgtgatg
ggagctcctggacctctgggatcccctgggaaccccggagcccccggcttccctggacct
aaaggtgacgatggtttcccagggcgaccaggtgggcccggcggttcaggtttgaaggga
gacaggggagagcccggtatcgcgggactcccaggacccagcattcctccccaggaactg
aagggtggcaagggagaaccaggagctccaggtttgggaggactgccaggtcaaaagggt
atccctggtctccctggagatgctggtataccaggacaggacggacgacctgggttgcca
ggacctcaaggtcccaaaggagacgcaggtatccctggaggaccaggctcaccaggagcc
ccaggagcgaaaggcaacatgggagagatgggcttcccaggacccacaggggcgaaagga
actccgggtcaatcaggtcggtcgggtggacccggtagttcaggagcaccagggttccct
ggagctaagggagagcccggttcccctggttttggttccccaggagctacaggtcccaag
ggtgagcccggtcagtcaggattccccgggcaaaacggagtaaaaggaaaccctggaaca
ccaggtcttccagggtttcctggcggccctggcgccaaaggtgaccccggcctcccagga
ttccaaggttctcccgggattcccgggcctaagggtctggatggtatcccaggtaacccc
ggtctcagcggaccacccggccgaccgggagagaacggccgtgccggatcacctgggttc
ccaggggacaagggtcaggcgggtcgtgacggaatccctggaccagcgggagtcaaagga
gacccaggtcttcctggtttcggtggccccggttctcctggtctcccaggattaccaggt
gctaagggagatcttggcgcccctggttcttccggtagccctggcttccctggtcagaag
ggagagatgggtttccctggcctgcctgggtcccctggcagcgttgggccccctggcgcc
ccaggtgtggccctccagggtcccaaaggtaacgccggcccccccggaccccctggaaga
ggagggcccgaaggtcctccaggtcctcctggctccgaaggtccccgtggccctgtcggc
agcggagggaccaaaggtgagaagggaattcccggaattcctggatcgcctggtttcccc
ggagcaaagggagaattcggatcgcccggattcccgggtaatgctggccttcctggtgcc
aaagggctgaagggagacatcggactgcctggagttcccggattcccaggaccaaaggga
gattctggaatccctggatcatctggtctccctggagaccccggagatgttggccctgct
ggacccccaggtgacccaggttttgctccagcccccatcgtgctgaagggagagcgtggc
ccccccggcccttcaggtctaccaggcggccgtggcgccacaggaccccccggactggag
ggactctcaggtcagcccggtcagccaggagaccccggtcctgagggacccccaggattc
agtggagcctccggccgcaaaggagacccaggacccgccggacagccaggtgagcgtgga
tatcccggtccccctggttcagatggcctgcagggccccccaggtccatctggatctgcc
tctgtggcgcacggcttcctgatcaccagacacagccagggcgaggacgtccccctctgc
ccagagggcaccagcctcatctacgatggctactctctactctacgtacagggcaacgag
agggcacacggacaggatctgggaactgctggtagttgcctgcgccggttcagcaccatg
ccattcatgttctgtaacatcaacaacgtgtgtaacttcgcctcccgtaacgactactcc
tattggctgtccacacccacgcccatgcccatgactatggcccccatcaccggagagggc
atcaaaccttacatcagcaggtgtgcagtgtgtgaggcccctgccatggtgatcgctgta
cacagtcagaccattcagatccccacctgccccagctactgggaaccactgtggatcgga
tactccttcatgatgcacactagtgctggtgctgagggttcgggtcaggctctggcctct
cctgggtcctgtctagaggaattccgaagcgctcccttcatcgagtgccacggtcgggga
acctgcaactactacggcaactcctacagcttctggctggccaccgtcgaccaatcagaa
atgttcaggaagccacagtcggagacgctgaaagcaggtaacctgcggacacgcgtcagc
cgctgtgtggtctgtatgaagaggacgtaa
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integrated database retrieval system