Salmo salar (Atlantic salmon): 106608922
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Entry
106608922 CDS
T04363
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04382
Cornified envelope formation
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106608922
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106608922
09142 Cell motility
04820 Cytoskeleton in muscle cells
106608922
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106608922
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106608922
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106608922
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106608922
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106608922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106608922
NCBI-ProteinID:
XP_014062615
UniProt:
A0A1S3SE43
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All DBs
Position
ssa07:complement(22108202..22192990)
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AA seq
1689 aa
AA seq
DB search
MNKNLKSLRNLAVGLVLVTLCIVVQESESAACHGCAAGSKCDCSGVKGGKGERGFPGLQG
QPGVPGFPGPEGPIGGRGEKGSDGPSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PRGTAGCNGTKGERGFPGSPGFPGLEGRSGPPGLPGQKGDPGDVISNDRFGQKGGVGLPG
LPGVPGNPGPAGLSGPIGPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLQGP
PGPPGQVGEQKRPTELEIQRGEKGDQGLPGPAGDPGYPGPPGVSGGSKGEKGEPGEAGKR
GKPGKDGDPGPAGFPGSKGDPGGPGLPGRDGDRGDKGDRGYPGPPGVVINGQTGARVGPK
GEPGFPGSSGRKGDRGQPGLSGPPGQPGTPGTGGVGQPGSPGFPGERGQKGDEGQPGISR
PGPPGRNGAPGLQGPPGPPGAAGVSTGGGNCLGGAPGLPGQQGDRGFQGETGQKGDKGET
CVNCFSRGNSIPGAPGPPGPPGFPGGPGGPGVKGDRGYPGGPGPSGSSGLPGPQGAPGFP
GEKGDPGEAIAVDGVRGDKGDTGFPGPPGLPGLDGGPGRNGVPGAPGPKGTSGSLLVKGE
RGPPGEPGLQGLPGDRGVPGSPGFGPQGPPGEKGVQGVSGRTGTPGAPGTKGEPGQTIAE
KGLPGPRGQDGDPGLPGNPGNPGGPGQPGFPGLPGAKGDPGLSGIGLPGPPGAKGFPGSS
GVPGSPGGPGRPGVDGLPGEPGGPGAKGEPGFGLPGPQGPPGFPGPKGLPGPKGDSGFPG
NPGSPGRSGFDGGPGAKGDSGINGIPGARGPPGSPSIGSQGIPGPIGPPGPMGSPGYSGA
NGEKGDPGPPGLDIPGLPGDRGSPGFPGSPGVVGPQGNPGGPGRDGLPGLPGGKGDMGVM
GAPGPLGSPGNPGAPGFPGPKGDDGFPGRPGGPGGSGLKGDRGEPGIAGLPGPSIPPQEL
KGGKGEPGAPGLGGLPGQKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGPGSPGA
PGAKGNMGEMGFPGPTGAKGTPGQSGRSGGPGSSGAPGFPGAKGEPGSPGFGSPGATGPK
GEPGQSGFPGQNGVKGNPGTPGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGIPGNP
GLSGPPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGSPGLPGLPG
AKGDLGAPGSSGSPGFPGQKGEMGFPGLPGSPGSVGPPGAPGVALQGPKGNAGPPGPPGR
GGPEGPPGPPGSEGPRGPVGSGGTKGEKGIPGIPGSPGFPGAKGEFGSPGFPGNAGLPGA
KGLKGDIGLPGVPGFPGPKGDSGIPGSSGLPGDPGDVGPAGPPGDPGFAPAPIVLKGERG
PPGPSGLPGGRGATGPPGLEGLSGQPGQPGDPGPEGPPGFSGASGRKGDPGPAGQPGERG
YPGPPGSDGLQGPPGPSGSASVAHGFLITRHSQGEDVPLCPEGTSLIYDGYSLLYVQGNE
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPTPMPMTMAPITGEG
IKPYISRCAVCEAPAMVIAVHSQTIQIPTCPSYWEPLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRVS
RCVVCMKRT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacttgaagagtctgcgaaatctcgcggtggggttggtgctcgtaaccctg
tgtatcgtggtccaggagtcggaatcagcggcgtgtcatggctgtgcagcgggatcaaag
tgtgactgcagcggagtaaaaggaggcaagggcgagaggggtttcccaggactacagggt
cagccaggcgtaccagggttccccggacctgaggggccaatcggaggcaggggagagaag
ggtagtgacggaccttcagggccatcaggtccaaaaggaattaggggacctcctggactg
cccggattcccaggaacaccaggaattccaggtctcccaggacaggacgggcccccgggc
ccaagaggaactgcaggctgcaacggaactaagggtgagagaggattccctggaagtcca
gggttccccggcctggaggggcgatcgggtccacctggtttgccaggacaaaagggagac
ccaggtgatgtcatctcaaatgaccgctttggacagaaaggaggtgtaggtttacctggc
ttgcctggagttcctggtaacccaggccctgcaggattgtcaggccctatcggtccacct
ggccccagaggttatgagggtcgttccgggcctcctggtcctcccggtcctaagggtaac
atgggattgaacttccaaggtcccaaaggagataagggggatccaggtctgcaggggcct
cccggtccaccaggacaggtcggggagcagaagagacccaccgagttagagatccagaga
ggagagaaaggtgatcaaggtttacctggtccagctggtgatcctggctatcctggtccc
cctggtgtatctggaggttcgaagggagagaaaggagagcctggagaagcaggcaaacgc
ggcaaaccggggaaagatggcgacccgggtcctgctggattccctggtagtaaaggagac
ccaggcggcccaggtctgccaggtcgggatggggacaggggggacaaaggtgaccgtgga
taccctggacctccgggcgtggtgattaatggtcagacaggagcacgtgtggggccaaaa
ggagagcctggtttccccgggtcatcaggaaggaaaggagacagaggacaacctggtctc
tcaggtcctccaggacaaccaggaaccccaggtaccggaggtgtaggccaacccggttcc
ccaggcttcccaggagagaggggccagaagggagacgagggccagccaggcatctcccgc
cctgggcccccaggacgaaatggggcccctgggcttcagggaccaccaggccctcccggg
gccgcaggggtctccacagggggcggtaactgtttaggaggggcccccgggttaccagga
caacaaggagacagagggtttcaaggagagaccggacagaaaggtgacaagggagaaacc
tgtgtgaactgtttctcacgtgggaactccatccctggagcaccaggccctcctggacct
cctgggttcccaggtggaccaggaggaccaggggttaaaggtgacagaggatatccaggt
ggcccagggccctcaggttcttctggtttgcctggtccccagggtgcacctggtttccca
ggagagaagggtgacccaggtgaggctattgctgtggatggggtgaggggcgacaaggga
gacacagggttccccggaccccctggcctgcctggtctggacggaggacctggtcgcaat
ggagttcctggagctcctggacccaaaggaacatctggctctctgttagtgaagggtgag
cgagggcctccgggtgagcccggtctgcagggtctcccaggtgacaggggtgtccccgga
tccccaggcttcggcccccaggggccccctggagagaagggtgtgcagggcgtctcaggg
agaacgggaacacctggagcaccaggcactaaaggtgagccgggtcaaacgatagcagag
aagggactcccaggacccaggggacaggatggagacccgggtcttcctggaaacccaggc
aaccccggcgggccaggacagcccggtttccccggcttaccaggtgccaagggcgacccc
ggcctctccggcattggactgccaggaccccccggcgctaaaggattcccaggctcatct
ggtgtgccaggtagtcccggaggtccaggaagaccaggagtggacggcctccccggtgag
ccaggtggacctggagctaagggagagccaggattcgggctgccaggtccccagggccct
ccaggcttccctggacccaaaggattacctggacccaaaggagactccggtttccccggc
aaccccggctcgcccggacgttccggcttcgacggtggccctggtgccaaaggtgactct
ggtatcaatggtatacccggagcccgtggacctccaggttcgccctccatcggctctcag
ggcatccccggccccattggacccccaggacccatgggctctccagggtactcaggtgcc
aacggagagaagggagaccccggtcctcctggcctggacattccagggttgccaggcgac
agaggaagtcccggtttccccggcagccccggggtagttggaccacagggtaaccctggc
ggccctggccgagacggactgcctggcctgcctggtggtaaaggagacatgggtgtgatg
ggagctcctggacctctgggatcccctgggaaccccggagcccccggcttccctggacct
aaaggtgacgatggtttcccagggcgaccaggtgggcccggcggttcaggtttgaaggga
gacaggggagagcccggtatcgcgggactcccaggacccagcattcctccccaggaactg
aagggtggcaagggagaaccaggagctccaggtttgggaggactgccaggtcaaaagggt
atccctggtctccctggagatgctggtataccaggacaggacggacgacctgggttgcca
ggacctcaaggtcccaaaggagacgcaggtatccctggaggaccaggctcaccaggagcc
ccaggagcgaaaggcaacatgggagagatgggcttcccaggacccacaggggcgaaagga
actccgggtcaatcaggtcggtcgggtggacccggtagttcaggagcaccagggttccct
ggagctaagggagagcccggttcccctggttttggttccccaggagctacaggtcccaag
ggtgagcccggtcagtcaggattccccgggcaaaacggagtaaaaggaaaccctggaaca
ccaggtcttccagggtttcctggcggccctggcgccaaaggtgaccccggcctcccagga
ttccaaggttctcccgggattcccgggcctaagggtctggatggtatcccaggtaacccc
ggtctcagcggaccacccggccgaccgggagagaacggccgtgccggatcacctgggttc
ccaggggacaagggtcaggcgggtcgtgacggaatccctggaccagcgggagtcaaagga
gacccaggtcttcctggtttcggtggccccggttctcctggtctcccaggattaccaggt
gctaagggagatcttggcgcccctggttcttccggtagccctggcttccctggtcagaag
ggagagatgggtttccctggcctgcctgggtcccctggcagcgttgggccccctggcgcc
ccaggtgtggccctccagggtcccaaaggtaacgccggcccccccggaccccctggaaga
ggagggcccgaaggtcctccaggtcctcctggctccgaaggtccccgtggccctgtcggc
agcggagggaccaaaggtgagaagggaattcccggaattcctggatcgcctggtttcccc
ggagcaaagggagaattcggatcgcccggattcccgggtaatgctggccttcctggtgcc
aaagggctgaagggagacatcggactgcctggagttcccggattcccaggaccaaaggga
gattctggaatccctggatcatctggtctccctggagaccccggagatgttggccctgct
ggacccccaggtgacccaggttttgctccagcccccatcgtgctgaagggagagcgtggc
ccccccggcccttcaggtctaccaggcggccgtggcgccacaggaccccccggactggag
ggactctcaggtcagcccggtcagccaggagaccccggtcctgagggacccccaggattc
agtggagcctccggccgcaaaggagacccaggacccgccggacagccaggtgagcgtgga
tatcccggtccccctggttcagatggcctgcagggccccccaggtccatctggatctgcc
tctgtggcgcacggcttcctgatcaccagacacagccagggcgaggacgtccccctctgc
ccagagggcaccagcctcatctacgatggctactctctactctacgtacagggcaacgag
agggcacacggacaggatctgggaactgctggtagttgcctgcgccggttcagcaccatg
ccattcatgttctgtaacatcaacaacgtgtgtaacttcgcctcccgtaacgactactcc
tattggctgtccacacccacgcccatgcccatgactatggcccccatcaccggagagggc
atcaaaccttacatcagcaggtgtgcagtgtgtgaggcccctgccatggtgatcgctgta
cacagtcagaccattcagatccccacctgccccagctactgggaaccactgtggatcgga
tactccttcatgatgcacactagtgctggtgctgagggttcgggtcaggctctggcctct
cctgggtcctgtctagaggaattccgaagcgctcccttcatcgagtgccacggtcgggga
acctgcaactactacggcaactcctacagcttctggctggccaccgtcgaccaatcagaa
atgttcaggaagccacagtcggagacgctgaaagcaggtaacctgcggacacgcgtcagc
cgctgtgtggtctgtatgaagaggacgtaa
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integrated database retrieval system