Salmo salar (Atlantic salmon): 106608923
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Entry
106608923 CDS
T04363
Name
(RefSeq) collagen alpha-6(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04382
Cornified envelope formation
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106608923
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106608923
09142 Cell motility
04820 Cytoskeleton in muscle cells
106608923
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106608923
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106608923
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106608923
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106608923
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106608923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106608923
NCBI-ProteinID:
XP_014062617
UniProt:
A0A1S3SE48
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Position
ssa07:22193771..22386240
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AA seq
1722 aa
AA seq
DB search
MKFWICVLAVSWAVEATLGGTTGEPCNGLDCSGGCNCNPEKGSRGRPGALGPVGPSGPEG
FPGDQGPSGPKGEKGHVGLGGPSGLKGEKGPMGVPGFPGTDGVPGHPGADGGRGLPGADG
CNGTQGDPGPRTLNGGIPGAPGLSGPTGPKGQKGEPVYVGLSGGVPGQPGLDGVPGPRGP
DGGPGDFGPRGPDGFLGAPGPPGPPGPVGSPSLGFQGEPGDKGDVGPQGDPGRPLVNGVV
EFVGFPKGDKGPKGEGGYKGVRGPTGRPGPPGPFGFPGEVGESGILGYPGGRGPPGFNGP
PGSPGRQGFTGSPGFPGQPGYRGPKGDQGEQGPPGPPIYTDAQGMSVQGAPGDNGIDGLP
GQPGDAGAPGFPGQPGRPGDSFSDGRGGSPGFPGTLGPKGERGNPGRQSYGPEGQPGGQG
LPGAPGPPGPPGRSDEDSSSGPCLVVTMGPKGQTLEVSIPEANIQTDLFGDLPGTPGRPG
AQGPPGASGYKGPKGELGDCNCLGEGTSGGVGPPGAPGADGRPGGFGRKGESGDPGIPGF
GGQPGTPGRAGERGFFGRKGEKGASFYPSFSRGIKGELGAQGPQGPPGDMGRPGRDGLPG
FPGQPGPPADVDGYGTVGERGFPGFSGAKGRTGEPGENGIGYEGTAGTRGLPGDPGFTGL
PGQPGLPGPPGDSCGQEGVNGAEGGLTVPCRLPGEDGEPGYPGIPGRTGPKGEPGFPGGP
GRPGFDGGKGERGDPGFGGQPGPQGFPGPRGDAGVPGIPGEGRPGAPGKNGFPGRLGEKG
QPGEVLGASTGLPGSPGFPGGPGDKGERGASGQPGGSGFDGRSGVSGAKGERGADGYPGT
PGLPGLPGEGRPGGFPGPAGPPGSRGLTGSPGCQGYPGLKGARGDAGFPGPAGMKGQPGE
PGGDGSPGLRGLPGPPGPGGRDGIPGGPGRKGESGYPGLVGFPGMPGNPGRPGGPGGKGA
PGFSGRDGLPGDFGAPGPKGDRGNAGPPGAPSLPVRVEYIEKGQMGDNGANGLPGFPGPR
GDKGFPGLPGRQGLPGLPGYADRAKGEQGLSGLPGRPAGPGYPGPKGSPGIIGFPGMPGP
RGDDGEPGFPGNPGVLGQPGAKGERGDSFGYPGGPGAKGEAGTPGYSGDPGAKGAPGDNG
FAGGPGFNGQKGAPGDRGIPGQMGTPGFTGAKGLNGYPGGRGLDGTPGRSGSPGTSGEKG
LPGSPGLDGLNGLAGPKGLPGTPGYSEGGRPGTPGAAGLKGERGSSIPGGPGYNGEKGAR
GESGGPGVTGFPGLPGPRGETVISNIPGPLGDPGLPGIDGEEGYRGPPGPPGPPGPGTAQ
GDRGDSGLSGIPGTPGNRGDPGGPGGPGRDGNPGFKGERGDSGYSGASGQRGFPGDPGYY
GGKGPKGRRGNTGRKGPQGKTFPRQDIRTPYGDMGDPGVNGASGSVGEAGNPGMPGRGGP
KGRPGAVGKLGRNGGSGLDGPLGDSGPPGFPGPTGSQGLPGKPGLQGPPGSVARSRSIGY
TLVKHSQNNQVPMCPQGMAQLWEGYSLLYVEGQEKAHNQDLGMAGSCLPRFSTVPFLYCT
PNEICYYASRNDKSYWLSTTAPIPMMPVGEEAISQYISRCSVCEAYSQPVAVHSQDLTIP
TCPSGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFAN
KYSFWLTTVEPSREFDPPPMDTLKGGNQRSRVSRCQVCSKIL
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctggatttgtgtactcgctgtcagctgggcagtagaagcgacactcgggggg
actacaggagaaccgtgtaatgggttggactgtagtgggggatgcaattgtaatccagag
aaaggcagcagggggcgtccaggggccttggggccagtaggacccagtggaccagagggc
ttcccaggtgaccaagggccttcagggcccaaaggagaaaagggtcacgtcggactcggg
ggcccctctgggctgaaaggagaaaaggggcctatgggcgtaccagggttcccaggaacc
gacggagtccccggtcacccaggtgcggacggtggcaggggtctaccgggagcagacggg
tgcaacggtacccagggagacccaggtcccagaactctaaacggaggaatacctggagct
ccaggactctctgggcccactggtcctaaaggacagaagggagagcctgtatacgttgga
ctcagtgggggagttcctggtcagcctggactggatggtgtacctggacctagaggtcca
gacggaggtcccggtgacttcggccccagaggtcctgatggattccttggtgctccaggc
ccccccggtccccctggccctgtagggagccccagtctagggtttcagggggagccagga
gacaagggcgatgtgggcccgcagggagacccaggcaggcccttggtcaatggagtggtg
gagtttgtgggctttcctaaaggagacaaaggacctaagggggaagggggttacaaagga
gtgcgtggaccaactggtagacccggcccacctggtcctttcggctttcctggcgaggtg
ggagagagtggaattttggggtatccagggggacggggtcctcctggttttaacgggcct
cccggatctccaggaagacagggattcacaggaagtccagggttccccggccaaccaggc
tacagaggacctaagggtgaccagggagaacaggggcctcccggacccccaatctacact
gacgcacaagggatgtctgttcaaggagcaccaggtgacaacggtatcgacggcctccct
ggtcaaccaggggacgcgggagctccggggtttccaggacaaccaggacgaccaggcgac
tccttcagcgatggtcgcggaggcagcccagggttccctggtacactggggcctaaggga
gagaggggtaacccaggtagacagagctatggtcctgagggccaaccaggaggacaaggt
ttaccaggagcccctggaccacccggaccaccaggcagatctgatgaagactcgtccagc
ggcccctgtctggtcgtcactatggggcccaagggccaaacactggaagttagcatacca
gaagccaacatccaaaccgacttgttcggcgatctaccaggaacgccaggacgaccagga
gcccagggaccacctggagccagtggctataagggacccaaaggggagctgggtgactgt
aactgcctgggagaaggcacctcgggtggggtggggccaccgggtgctcctggggctgat
ggaagacctggggggttcggacgtaaaggcgagagcggagaccctggcatacccggtttc
ggaggacaaccaggaacacctggtcgtgcgggtgagaggggtttctttgggcgtaaagga
gagaagggtgcctccttctacccgtcgttcagccgggggatcaagggtgaacttggggcc
cagggccctcagggcccccctggagacatgggccgacccgggagagatggactgcctggg
ttccctggacagcctgggcctcctgctgatgtcgatggctacggaaccgtcggagagaga
ggtttcccagggttctcgggggccaaaggtcgcacgggtgaaccaggagagaacgggatt
ggctacgagggtaccgctggtacccgcgggttgccaggcgacccgggcttcaccgggtta
ccagggcaacctggtttacctggcccgccaggtgacagctgtgggcaggagggggttaat
ggcgcagagggagggttgacggtcccttgtcgtctacctggcgaggacggagaacccggc
tacccaggaatacctggaagaacaggtcccaagggcgagccaggtttcccagggggtccc
ggtcggcccggctttgatggagggaagggagagagaggagaccctggcttcggaggtcag
cctggaccacaaggtttccctggccccagaggagatgcgggggtcccaggtatcccaggc
gagggccgtccaggggccccagggaaaaacgggttcccggggcggctgggggaaaagggg
cagccgggggaggttctgggggcctcaacaggtctccctggatcacctgggttccccgga
ggaccaggagacaagggagagcgaggagcatcgggtcaacctggaggatcaggttttgac
gggcggtccggtgtttccggagctaagggtgagcgcggggcagatggctaccccggaact
ccaggtcttcctggacttcccggagagggcagaccgggtggatttcccggtcctgccgga
ccacccggaagcagaggattaaccggctctccaggctgtcaaggctaccccggtttgaag
ggagccagaggtgatgcaggctttccaggcccagctgggatgaagggacaaccaggagaa
ccaggaggcgatggctctccaggactcaggggtcttccaggaccaccgggccccggggga
agagacggcatccctgggggaccaggaagaaagggcgagagcggttaccccggactggtg
ggtttccccggaatgccaggtaaccctggaagacctggaggtccaggagggaaaggagct
cccggattctcaggaagagacggtctgcccggagatttcggagcgccaggacctaaaggt
gacagaggtaacgctggtccacccggcgcaccctctctgcccgtcagagttgagtacatt
gagaagggacagatgggcgacaatggtgccaacggtctacccggtttccctggacctaga
ggtgacaagggtttcccagggctgcctggtcgacagggtttgcccgggctgcctggttat
gctgacagagctaaaggagaacaaggtctttctggtctccccggacgcccagccggacca
ggctacccggggcctaaaggatctcctggtatcattggcttccctggcatgcctggacct
aggggtgacgatggcgaacctggtttccctggaaaccccggagtccttggtcagccaggt
gctaaaggtgagagaggtgactctttcggctaccccggaggtcccggagctaaaggtgag
gccggaacccctggttactcaggtgacccaggtgctaaaggcgcccccggggacaacggt
ttcgcaggcggccctgggttcaacggacagaagggagcaccgggagatcgaggaataccc
ggacaaatgggtacccctggtttcactggcgctaagggtctgaacggatacccaggagga
agaggtctagacgggacgcctggccgctccggctcccctggaacatctggagagaaaggt
ctgccgggatctcctggtcttgatgggctcaacggactggctggacccaagggtctacca
ggaaccccaggttatagtgaggggggtcgtcccggcactcctggagcagccggtctgaag
ggagagaggggctcctccatcccaggtggacctgggtacaatggagagaagggagctaga
ggagagtcaggaggtcctggtgtgacgggcttcccaggtctgcctggtcctcgcggggag
acggtcatttctaacatccctggaccattgggagaccctggcctgcccggaatcgatgga
gaagaaggttaccgtggtcctccaggccccccaggcccaccggggcccggtacagcccaa
ggagacagaggcgactctgggctatctggcatccctggtacccctggtaaccgtggagac
cctgggggtccaggtggcccaggacgggacggaaaccctggattcaaaggagagagaggt
gactctgggtacagtggagcatcaggacaaaggggcttccctggagatccaggatactac
ggagggaaaggacccaaaggaaggagaggtaatactggtcgtaagggaccccaaggtaaa
actttccccaggcaggacatccggacaccctatggagacatgggagaccccggggtcaac
ggagcttcagggtccgtgggagaagcaggcaatcccggcatgccaggcagagggggtcct
aaaggccggcccggcgcggtagggaagctggggaggaacggagggtcaggtctggacgga
cctctgggagactctggtcctcctggtttccctggacctaccgggtcacaaggtctgccc
ggtaagcctggcctgcagggtcccccaggaagtgtggcgcgcagcaggagtattggatac
actctggtgaagcacagtcagaacaaccaggtgcccatgtgtcctcagggcatggctcag
ctctgggaaggatacagtctgctgtatgttgaggggcaggagaaggcccataaccaggac
ctcggtatggcaggctcctgccttccccgtttcagcactgtccccttcctgtactgcacg
cccaacgagatctgctactacgccagccgcaacgacaagtcctattggctgtccaccacg
gcacccatccccatgatgccggtgggagaggaggctatcagccagtacatcagcaggtgc
tccgtgtgcgaggcctactcccagcctgtagctgtccactcacaggacctcaccatccct
acctgcccttccggctggagatccctctggatcgggtactcctttctcatgcacactgct
gccggggctgagggcggcggccagtccctggtctctccagggtcctgtctggaagacttc
cgcgccacgccctttattgagtgtaatggggcaaagggcacctgccactactttgccaac
aagtacagcttctggctgaccacggttgagcctagccgggagttcgacccccctccgatg
gacacactgaagggaggcaaccaacgcagccgagtcagtcgctgtcaagtctgcagcaag
atcttgtag
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