KEGG   Salmo salar (Atlantic salmon): 106608923
Entry
106608923         CDS       T04363                                 
Name
(RefSeq) collagen alpha-6(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04382  Cornified envelope formation
sasa04510  Focal adhesion
sasa04512  ECM-receptor interaction
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106608923
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    106608923
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106608923
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    106608923
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sasa04147]
    106608923
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106608923
Exosome [BR:sasa04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   106608923
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106608923
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 106608923
NCBI-ProteinID: XP_014062617
UniProt: A0A1S3SE48
LinkDB
Position
ssa07:22193771..22386240
AA seq 1722 aa
MKFWICVLAVSWAVEATLGGTTGEPCNGLDCSGGCNCNPEKGSRGRPGALGPVGPSGPEG
FPGDQGPSGPKGEKGHVGLGGPSGLKGEKGPMGVPGFPGTDGVPGHPGADGGRGLPGADG
CNGTQGDPGPRTLNGGIPGAPGLSGPTGPKGQKGEPVYVGLSGGVPGQPGLDGVPGPRGP
DGGPGDFGPRGPDGFLGAPGPPGPPGPVGSPSLGFQGEPGDKGDVGPQGDPGRPLVNGVV
EFVGFPKGDKGPKGEGGYKGVRGPTGRPGPPGPFGFPGEVGESGILGYPGGRGPPGFNGP
PGSPGRQGFTGSPGFPGQPGYRGPKGDQGEQGPPGPPIYTDAQGMSVQGAPGDNGIDGLP
GQPGDAGAPGFPGQPGRPGDSFSDGRGGSPGFPGTLGPKGERGNPGRQSYGPEGQPGGQG
LPGAPGPPGPPGRSDEDSSSGPCLVVTMGPKGQTLEVSIPEANIQTDLFGDLPGTPGRPG
AQGPPGASGYKGPKGELGDCNCLGEGTSGGVGPPGAPGADGRPGGFGRKGESGDPGIPGF
GGQPGTPGRAGERGFFGRKGEKGASFYPSFSRGIKGELGAQGPQGPPGDMGRPGRDGLPG
FPGQPGPPADVDGYGTVGERGFPGFSGAKGRTGEPGENGIGYEGTAGTRGLPGDPGFTGL
PGQPGLPGPPGDSCGQEGVNGAEGGLTVPCRLPGEDGEPGYPGIPGRTGPKGEPGFPGGP
GRPGFDGGKGERGDPGFGGQPGPQGFPGPRGDAGVPGIPGEGRPGAPGKNGFPGRLGEKG
QPGEVLGASTGLPGSPGFPGGPGDKGERGASGQPGGSGFDGRSGVSGAKGERGADGYPGT
PGLPGLPGEGRPGGFPGPAGPPGSRGLTGSPGCQGYPGLKGARGDAGFPGPAGMKGQPGE
PGGDGSPGLRGLPGPPGPGGRDGIPGGPGRKGESGYPGLVGFPGMPGNPGRPGGPGGKGA
PGFSGRDGLPGDFGAPGPKGDRGNAGPPGAPSLPVRVEYIEKGQMGDNGANGLPGFPGPR
GDKGFPGLPGRQGLPGLPGYADRAKGEQGLSGLPGRPAGPGYPGPKGSPGIIGFPGMPGP
RGDDGEPGFPGNPGVLGQPGAKGERGDSFGYPGGPGAKGEAGTPGYSGDPGAKGAPGDNG
FAGGPGFNGQKGAPGDRGIPGQMGTPGFTGAKGLNGYPGGRGLDGTPGRSGSPGTSGEKG
LPGSPGLDGLNGLAGPKGLPGTPGYSEGGRPGTPGAAGLKGERGSSIPGGPGYNGEKGAR
GESGGPGVTGFPGLPGPRGETVISNIPGPLGDPGLPGIDGEEGYRGPPGPPGPPGPGTAQ
GDRGDSGLSGIPGTPGNRGDPGGPGGPGRDGNPGFKGERGDSGYSGASGQRGFPGDPGYY
GGKGPKGRRGNTGRKGPQGKTFPRQDIRTPYGDMGDPGVNGASGSVGEAGNPGMPGRGGP
KGRPGAVGKLGRNGGSGLDGPLGDSGPPGFPGPTGSQGLPGKPGLQGPPGSVARSRSIGY
TLVKHSQNNQVPMCPQGMAQLWEGYSLLYVEGQEKAHNQDLGMAGSCLPRFSTVPFLYCT
PNEICYYASRNDKSYWLSTTAPIPMMPVGEEAISQYISRCSVCEAYSQPVAVHSQDLTIP
TCPSGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFAN
KYSFWLTTVEPSREFDPPPMDTLKGGNQRSRVSRCQVCSKIL
NT seq 5169 nt   +upstreamnt  +downstreamnt
atgaaattctggatttgtgtactcgctgtcagctgggcagtagaagcgacactcgggggg
actacaggagaaccgtgtaatgggttggactgtagtgggggatgcaattgtaatccagag
aaaggcagcagggggcgtccaggggccttggggccagtaggacccagtggaccagagggc
ttcccaggtgaccaagggccttcagggcccaaaggagaaaagggtcacgtcggactcggg
ggcccctctgggctgaaaggagaaaaggggcctatgggcgtaccagggttcccaggaacc
gacggagtccccggtcacccaggtgcggacggtggcaggggtctaccgggagcagacggg
tgcaacggtacccagggagacccaggtcccagaactctaaacggaggaatacctggagct
ccaggactctctgggcccactggtcctaaaggacagaagggagagcctgtatacgttgga
ctcagtgggggagttcctggtcagcctggactggatggtgtacctggacctagaggtcca
gacggaggtcccggtgacttcggccccagaggtcctgatggattccttggtgctccaggc
ccccccggtccccctggccctgtagggagccccagtctagggtttcagggggagccagga
gacaagggcgatgtgggcccgcagggagacccaggcaggcccttggtcaatggagtggtg
gagtttgtgggctttcctaaaggagacaaaggacctaagggggaagggggttacaaagga
gtgcgtggaccaactggtagacccggcccacctggtcctttcggctttcctggcgaggtg
ggagagagtggaattttggggtatccagggggacggggtcctcctggttttaacgggcct
cccggatctccaggaagacagggattcacaggaagtccagggttccccggccaaccaggc
tacagaggacctaagggtgaccagggagaacaggggcctcccggacccccaatctacact
gacgcacaagggatgtctgttcaaggagcaccaggtgacaacggtatcgacggcctccct
ggtcaaccaggggacgcgggagctccggggtttccaggacaaccaggacgaccaggcgac
tccttcagcgatggtcgcggaggcagcccagggttccctggtacactggggcctaaggga
gagaggggtaacccaggtagacagagctatggtcctgagggccaaccaggaggacaaggt
ttaccaggagcccctggaccacccggaccaccaggcagatctgatgaagactcgtccagc
ggcccctgtctggtcgtcactatggggcccaagggccaaacactggaagttagcatacca
gaagccaacatccaaaccgacttgttcggcgatctaccaggaacgccaggacgaccagga
gcccagggaccacctggagccagtggctataagggacccaaaggggagctgggtgactgt
aactgcctgggagaaggcacctcgggtggggtggggccaccgggtgctcctggggctgat
ggaagacctggggggttcggacgtaaaggcgagagcggagaccctggcatacccggtttc
ggaggacaaccaggaacacctggtcgtgcgggtgagaggggtttctttgggcgtaaagga
gagaagggtgcctccttctacccgtcgttcagccgggggatcaagggtgaacttggggcc
cagggccctcagggcccccctggagacatgggccgacccgggagagatggactgcctggg
ttccctggacagcctgggcctcctgctgatgtcgatggctacggaaccgtcggagagaga
ggtttcccagggttctcgggggccaaaggtcgcacgggtgaaccaggagagaacgggatt
ggctacgagggtaccgctggtacccgcgggttgccaggcgacccgggcttcaccgggtta
ccagggcaacctggtttacctggcccgccaggtgacagctgtgggcaggagggggttaat
ggcgcagagggagggttgacggtcccttgtcgtctacctggcgaggacggagaacccggc
tacccaggaatacctggaagaacaggtcccaagggcgagccaggtttcccagggggtccc
ggtcggcccggctttgatggagggaagggagagagaggagaccctggcttcggaggtcag
cctggaccacaaggtttccctggccccagaggagatgcgggggtcccaggtatcccaggc
gagggccgtccaggggccccagggaaaaacgggttcccggggcggctgggggaaaagggg
cagccgggggaggttctgggggcctcaacaggtctccctggatcacctgggttccccgga
ggaccaggagacaagggagagcgaggagcatcgggtcaacctggaggatcaggttttgac
gggcggtccggtgtttccggagctaagggtgagcgcggggcagatggctaccccggaact
ccaggtcttcctggacttcccggagagggcagaccgggtggatttcccggtcctgccgga
ccacccggaagcagaggattaaccggctctccaggctgtcaaggctaccccggtttgaag
ggagccagaggtgatgcaggctttccaggcccagctgggatgaagggacaaccaggagaa
ccaggaggcgatggctctccaggactcaggggtcttccaggaccaccgggccccggggga
agagacggcatccctgggggaccaggaagaaagggcgagagcggttaccccggactggtg
ggtttccccggaatgccaggtaaccctggaagacctggaggtccaggagggaaaggagct
cccggattctcaggaagagacggtctgcccggagatttcggagcgccaggacctaaaggt
gacagaggtaacgctggtccacccggcgcaccctctctgcccgtcagagttgagtacatt
gagaagggacagatgggcgacaatggtgccaacggtctacccggtttccctggacctaga
ggtgacaagggtttcccagggctgcctggtcgacagggtttgcccgggctgcctggttat
gctgacagagctaaaggagaacaaggtctttctggtctccccggacgcccagccggacca
ggctacccggggcctaaaggatctcctggtatcattggcttccctggcatgcctggacct
aggggtgacgatggcgaacctggtttccctggaaaccccggagtccttggtcagccaggt
gctaaaggtgagagaggtgactctttcggctaccccggaggtcccggagctaaaggtgag
gccggaacccctggttactcaggtgacccaggtgctaaaggcgcccccggggacaacggt
ttcgcaggcggccctgggttcaacggacagaagggagcaccgggagatcgaggaataccc
ggacaaatgggtacccctggtttcactggcgctaagggtctgaacggatacccaggagga
agaggtctagacgggacgcctggccgctccggctcccctggaacatctggagagaaaggt
ctgccgggatctcctggtcttgatgggctcaacggactggctggacccaagggtctacca
ggaaccccaggttatagtgaggggggtcgtcccggcactcctggagcagccggtctgaag
ggagagaggggctcctccatcccaggtggacctgggtacaatggagagaagggagctaga
ggagagtcaggaggtcctggtgtgacgggcttcccaggtctgcctggtcctcgcggggag
acggtcatttctaacatccctggaccattgggagaccctggcctgcccggaatcgatgga
gaagaaggttaccgtggtcctccaggccccccaggcccaccggggcccggtacagcccaa
ggagacagaggcgactctgggctatctggcatccctggtacccctggtaaccgtggagac
cctgggggtccaggtggcccaggacgggacggaaaccctggattcaaaggagagagaggt
gactctgggtacagtggagcatcaggacaaaggggcttccctggagatccaggatactac
ggagggaaaggacccaaaggaaggagaggtaatactggtcgtaagggaccccaaggtaaa
actttccccaggcaggacatccggacaccctatggagacatgggagaccccggggtcaac
ggagcttcagggtccgtgggagaagcaggcaatcccggcatgccaggcagagggggtcct
aaaggccggcccggcgcggtagggaagctggggaggaacggagggtcaggtctggacgga
cctctgggagactctggtcctcctggtttccctggacctaccgggtcacaaggtctgccc
ggtaagcctggcctgcagggtcccccaggaagtgtggcgcgcagcaggagtattggatac
actctggtgaagcacagtcagaacaaccaggtgcccatgtgtcctcagggcatggctcag
ctctgggaaggatacagtctgctgtatgttgaggggcaggagaaggcccataaccaggac
ctcggtatggcaggctcctgccttccccgtttcagcactgtccccttcctgtactgcacg
cccaacgagatctgctactacgccagccgcaacgacaagtcctattggctgtccaccacg
gcacccatccccatgatgccggtgggagaggaggctatcagccagtacatcagcaggtgc
tccgtgtgcgaggcctactcccagcctgtagctgtccactcacaggacctcaccatccct
acctgcccttccggctggagatccctctggatcgggtactcctttctcatgcacactgct
gccggggctgagggcggcggccagtccctggtctctccagggtcctgtctggaagacttc
cgcgccacgccctttattgagtgtaatggggcaaagggcacctgccactactttgccaac
aagtacagcttctggctgaccacggttgagcctagccgggagttcgacccccctccgatg
gacacactgaagggaggcaaccaacgcagccgagtcagtcgctgtcaagtctgcagcaag
atcttgtag

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