Salmo salar (Atlantic salmon): 106609880
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Entry
106609880 CDS
T04363
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa02010
ABC transporters
sasa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
106609880
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106609880
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sasa02000
]
106609880
Transporters [BR:
sasa02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
106609880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
106609880
NCBI-ProteinID:
XP_014064379
UniProt:
A0A1S3SJ59
LinkDB
All DBs
Position
ssa08:344059..380535
Genome browser
AA seq
2282 aa
AA seq
DB search
MAISTQLGLLLWKNFTYRRRQTLQLIIEIIWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGESPGLVGNFNDSIISRLFIDAKKILLYSQNDK
SFEGYKVLVRALGKLQSNTAGFKLKDFLRDKETLSSFLHRNASLSHHAVQQIVEADLNLE
KVLIGGFGVHLRDMCNTTSLEEFVTISDKNVSRLTQDIICKASPDWLNKAQDHFLSNLDF
LKPIRKDVKSDPEVVQKVSAATDGLLESLGALAVELASMKSWKEMRNEIHYLTANATGSP
SHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGGNGSDDEPVSAYDNTSTPY
CNSMMRSLEASPISRMIWRALKPLLMGKILYTPDTPATQRIIHEMNKTFQELGILRDLGG
MWEEMRPKVWNFMESSEEMDLFRTLLQNNASARFFNDRLAGTEWKVEDVSRFLTKAAEDK
RPAGSAYTWREVFNETDDAIKTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAG
IVFPDIARSNSSDLPGNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDVIEQGIIRAVTGSKEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAL
IIKGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISASLLVVILKMGNLLPYSD
PCVVFLFLASFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKVIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSICLMLFDSFL
YGVMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKQGKNIQERKEGNAEAVCIEEEPSHI
EPGVYIKNLVKVYSHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMEQI
VNDIGLPHKRQCRSNTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRPGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDLD
LTLSSCRNSSSSSVSYSKKVGLPQPQPQALTVLKEDSVSESSSDAGLGSEPESEATTIDV
TMISNVIFKHVPAARLVEDLGHELTYVLPYKAAKGGAFVELFHEIDDRLSDLGISSYGIS
DTTLEEIFLKVAEDSGVDVAELPNSDGTIPARRHRRHAFGDHQSCLKPFNEDDAFDFNDS
EGDPESRETDWLGGSDGKGSYQVKGWRLIRQQFVALIWKRFLYARRSRKGFFAQIVLPAV
FVCIALVFSLIVPPFGKYPSLELEPGMYEEQFTFISNDAPEDANTNKLLGALTNYDGFDS
RCNSPHAPCNTLDDEWVVPEVPESVRDIFMNGNWSMENPSPLCECSCEGRKKMLPECPAG
AGGLPPPQVKISDKGTLQNLTGRNISDYLVKTYAQIIGKSLKNKISVNEFRYGGFSLGAR
NTQLLPPGDDIDQAISEIRRRFHLERGTAADRFLASLSSFIQGLDTKNNVKIWFNNKGWH
SIGSFLNVMNNGILRASLPAGQDPREYGIRAFNHPLNLTKEQLSQVALMTTSVDVLVSIC
VIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPFLYWLSNFIWDMCNYIVPATLVIII
FICFQQDAYVSSTNLPVLALLLLFYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGIN
GSVSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRF
RSPLAWDMVGKNLFAMAVQGVVFFTITVLIQYRFCIKARSMSTDQKPIGEEDEDVARERQ
RILGGGGQSDILELKQLTKVYNRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLT
GDSIVTSGEAYLAGKSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKE
VCEVAEWGIRKLGLIKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKAR
RALWNCILSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYT
IILRVAGPDPDLRPVMEFIEKELPGSTLKEKHRNMLQYQLSSSKTSLARIFSILAKNKEW
LHIEDYSVSQTTLDQVFVNFAKDQSDEDHLKDISMHKRDAVAVDITQLKSFLTDEKARES
CV
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atggccatctctactcaactgggcttactgctgtggaagaacttcacctacagaaggaga
cagacactccagctaattatcgagataatatggccgctcttcatcttcttcatcctcata
tctgtgaggatgcattacccaccctacgaacaacatgagtgccatttccctaacaaggcc
atgccctcggcgggcaccttgccctgggtacaagggatcatctgtaacgccaacaacccc
tgcttccgccaccccacaccaggagagagcccagggctggtgggcaacttcaacgattct
ataatctcccgtctgttcatcgatgccaagaagatcctcctctacagccagaatgacaag
agcttcgagggctacaaagttctggtgcgggctctggggaaactacagagcaacacggca
ggtttcaagctgaaggactttctccgtgataaggagaccttgtcgtcgttcctgcatcgc
aacgcctccctatcccatcacgccgtccagcagattgtagaggctgacctcaacctagag
aaggtgctgattggaggtttcggcgtccatcttagagacatgtgtaacaccacttctctg
gaggagtttgtgaccatctccgacaagaatgtgtcacggctcactcaagacatcatctgc
aaggcctcccctgattggctgaacaaggcccaggaccacttcctgtctaacctggacttc
ctgaaacccatacggaaggacgtgaagtccgaccctgaggtcgtccagaaggtatccgcg
gcaaccgacggtctgctagagagcttgggagcgctggctgtagagctggccagtatgaag
agttggaaggagatgcgtaacgagatccattacctgacggccaacgccacaggctccccc
agccacatgtaccaggccgtgtcccgtatcgtctgtggccaccccgagggcggcggactg
aagatcaagtccctcaactggtacgaggacaacaactacaaggccctgttcggtaaccat
ggcggcaacggcagcgacgacgaacccgtgtccgcctacgacaacacctcaactccgtac
tgtaacagcatgatgaggagtctggaagctagccccatctccaggatgatctggagggcc
ctgaagcctctcctcatgggaaagatcctgtacacccccgacactcccgccacacagagg
atcatacacgagatgaacaagacattccaggagctgggtatcctgagggacctgggtggg
atgtgggaggagatgaggcctaaagtctggaacttcatggagagcagtgaggagatggac
ctgtttcggacactgcttcagaacaacgccagtgcccgtttcttcaacgaccgtctggct
ggcacagagtggaaggtggaggacgtgtcccgcttcctgaccaaggctgcagaggacaaa
cgtcccgccggctcggcctacacctggagagaggtgttcaacgagaccgacgacgctatc
aagaccatctcccgctttatggagtgtgtgaacctggataaactagagccagtggccaat
gaggaaagactggtcaacaaatccatgggtctcctagacaaccagaagttctgggctggg
atagtgtttccggacatcgcccgtagcaacagttctgacctgccgggtaacgtcaactac
aagatccgcatggacatcgacaacgtggagcgcaccaacaagatcaaggacggttactgg
gaccctggtccccgggcggacccctttgaggacctgcgctacatctggggtggtttctcc
tacctgcaggacgttattgaacagggcatcatcagggcggtgacgggcagtaaagagaag
actggagtttacatccaacagatgccttacccctgctacgtagacgatatgttcctgcgg
gtgatgagtcgctccatgcctctcttcatgaccctggcctggatgtactctgtggccctc
atcatcaagggcgtggtctatgagaaggaggcgcggctcaaagagaccatgaggatcatg
ggattggacaatggcatcctgtggctcagctggttcatcagcagcctcatccccctgctc
atctccgcctcgctgctggtggtcatactcaagatggggaacctgcttccctacagcgac
ccttgcgtggtcttcctgttcctggcttcctttgctgtggtaaccatcatgcagtgcttc
ctcatcagtaccatcttctcccgtgccaacctggcggcggcctgcgggggaatcatctac
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactacgtgggcttcggg
gctaaagtcattgtgagcctgttgtccccggtggcgtttgggttcggctgtgagtacttt
gccctgtttgaggagcagggagtgggtatccagtggtccaacctgttgtccagccccttg
gaagaggacagctactccctcaccacctccatctgtctcatgctgtttgactccttcctc
tacggggtcatgacctggtacatcgaggctgtcttccctggccagtatgggatccccaga
ccctggtatttccccttcaccaagtcctactggtgtggagagaaacaagggaagaatata
caagaaagaaaggaaggaaacgcagaagctgtgtgcatcgaagaggagccgtctcacatc
gagcctggtgtttacatcaagaacctagtgaaggtgtatagccatggcaacaagctggct
gtagacgggttgaccctgggtttctacgaggggcagatcacctctttcctggggcacaac
ggagccggcaagaccaccaccatgtccatcctgacgggtctgttcccgcccacctctggc
accgcctacatcctgggcaaggacatccgctcggagctcagcgccatccgacagaacctg
ggtgtctgcccgcaacacaacgttctcttcagcatgctgacggtggaggagcacatctgg
ttctatgcccgtctgaagggtctgtctgaggagaaggtgaaggctgagatggagcagatc
gtcaacgacatcggcctgcctcacaaacgccagtgtcgtagcaacacgctgtccgggggc
atgcagaggaaactgtcagtggcgttggctttcgttggagggtcaaaggtcgtgatcctg
gatgagcccactgctggagtcgacccctacgcacgccggggaatttgggacctgcttctg
aagtatcgtccaggccgcaccatcatcctctcaactcaccacatggacgaggcggacatc
ttgggcgaccgcattgccatcatctcccacggcaagttgtgctgcgtgggctcctccctg
ttcctgaagacccagctggggacgggctactacctgaccctggtgaagagagacttggac
ctgaccctcagctcctgtaggaactcctccagcagctctgtctcctacagcaagaaggtg
ggcctccctcagccgcaacctcaggccctcacagtcctaaaggaggacagtgtttctgag
agcagctctgatgctggactgggtagtgaacctgagagtgaagccaccactattgacgta
accatgatctccaatgtgatcttcaagcacgtcccagctgccaggctggttgaggacctg
ggccatgaactcacctacgttctgccctacaaggcggccaaaggtggagccttcgtggaa
ctcttccacgagatcgacgaccgcctgtctgacctcggcatctccagctacggcatctca
gacaccaccctggaagagattttcctgaaagtagcagaggacagtggagtggacgttgct
gaacttcccaactctgatggcaccatcccggctcgtaggcaccgcagacatgcgttcgga
gaccaccagagctgtctgaaacccttcaacgaggacgacgctttcgacttcaacgactca
gaaggtgacccagaatctcgtgagacggactggctgggaggctcggatggtaaaggctcg
taccaggtcaaaggctggcgtctgattagacagcagtttgtggcgttgatatggaaacgc
ttcctgtatgcccggcgctccaggaaaggcttcttcgctcagatcgtgcttcctgctgtg
tttgtgtgcatcgccctcgtcttcagtctcatcgtccctccgtttggaaagtatcccagc
ctggagctggagcctggcatgtatgaagaacagttcaccttcatcagcaacgacgcccct
gaggatgcaaacactaacaagctgttgggtgccctgacaaactacgatggctttgattca
cgctgtaactcacctcatgccccttgcaacacgttggatgatgagtgggtcgttcctgag
gtaccggagagtgtgagggacatctttatgaatggcaactggagtatggaaaacccctct
cctctgtgtgagtgcagctgtgaaggacgcaagaagatgctacctgaatgcccagcggga
gctggtggtcttcctcctccacaggtgaaaatcagtgacaaaggtaccctgcaaaatctg
actggcagaaatatctcagattacctggtcaaaacctatgctcagattatcgggaaaagt
ttgaagaacaaaatctcggtcaatgaattcagatatggcggattctcattgggcgctagg
aacactcagctcctcccaccaggtgatgatattgatcaggccatctctgagatcagacga
cgcttccacctggaaagggggactgctgctgaccgtttcctcgccagcttatccagtttt
atccagggactggacactaagaacaacgtcaagatctggttcaacaacaaggggtggcac
agcatcggttctttcctgaacgtgatgaacaacggaatcctgcgcgccagcctgcccgcc
ggccaggatcccagggagtatggcatccgtgccttcaaccacccactcaacctcaccaag
gagcagctgtcccaggtcgcactgatgaccacctccgtggacgtgctggtgtccatctgc
gtgatcttcgccatgtctttcgtcccggccagcttcgtagtcttcctcattcaggagaga
gtcaacaaggccaagcacatgcagttcatcagtggcgtgcagcccttcctctattggctg
tccaacttcatctgggacatgtgtaactacatcgtccctgctactctggtcattatcatc
ttcatctgtttccaacaagacgcctacgtctcctccaccaacctgcctgtactggccctg
ctgctgctgttctatgggtggtccatcacgcccctgatgtaccccgcgtccttcttcttt
aaaatccccagcacggcctacgtggtgctcacctccgtcaacatcctcatcggcatcaac
ggcagcgtctccacctttgtcctcgagctcttcggcagcaacgagatcggagggatcaac
gacatcctgaagaacgtgttcctgatcttccctcacttctgtctgggccgaggcctcatc
gacatggtgaagaaccaggccatggccgacgctctggagaggtttggtgagaaccggttc
cgttcccctctggcgtgggacatggtgggcaagaacctgttcgccatggctgtgcagggc
gtggtcttcttcactatcaccgtgctcatccaataccgcttctgtatcaaggccagatct
atgagcaccgaccagaaacctattggtgaagaagatgaagacgtggccagagagaggcaa
aggattctgggaggagggggacagtctgacattctggaactcaagcagctgaccaaggtg
tacaatagaaaacagaaaccagcagtggatcgtctttgtgtgggaattcctccaggagag
tgttttggtctgcttggagtcaacggagcaggaaagacgagcaccttcaagatgctgact
ggagactcaatagtcacgagtggagaagcttacctggcgggaaagagtgtgttgacggag
atcaacgaggtgcaccagaacatgggctactgccctcagtttgatgctatcaacgacctg
ctgactggcagggagcacctggagttctacgccatcctgaggggggttcccgagaaggaa
gtgtgtgaggtggcagagtggggcatccgtaaactaggcctgatcaagtatgtggacaag
gcagcagggagctacagtggagggaacatgaggaaactctccacggccatggcactgatc
ggtggtccaccagtggtcttcctggacgagcccaccactggtatggaccccaaggccaga
cgggctctgtggaactgcattctcagtatcgtcaaggagggccgatcggtggttctcacc
tcgcacagtatggaggagtgtgaggccctgtgtacgcggatggccatcatggtcaatggg
aggttccgctgcttgggcagcgtacagcacttaaagaacagatttggggatggctacacc
atcatcctccgggtggcaggacctgacccggacctgaggccggtgatggagttcattgag
aaggagcttccaggcagcactctgaaggagaagcacaggaacatgctgcagtatcagctg
tcctcttccaaaacctccctggcacgcatcttcagcatcctggccaagaacaaggagtgg
ctgcacattgaggactactccgtttcccagacaacactagaccaagtatttgtcaatttc
gccaaggaccaaagtgacgaggaccacttaaaagacatttcaatgcacaagagagacgcg
gtggcagtggacattacacagctcaagtctttcctcacagacgagaaggccagggagagc
tgtgtgtga
DBGET
integrated database retrieval system
