Salmo salar (Atlantic salmon): 106610969
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Entry
106610969 CDS
T04363
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04137
Mitophagy - animal
sasa04140
Autophagy - animal
sasa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106610969 (HIF1A)
04137 Mitophagy - animal
106610969 (HIF1A)
04148 Efferocytosis
106610969 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106610969 (HIF1A)
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
106610969 (HIF1A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
106610969
NCBI-ProteinID:
XP_014066198
UniProt:
C0HAF0
A0A1S3SPC5
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Position
ssa09:25131988..25181704
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AA seq
802 aa
AA seq
DB search
MHLSTIYGNTNYGFNLNSYVNFRLFLYGFETQFIFLAEAQNKSVVLKMNTRVVPEKKSRV
SSERRKEKSRDAARYRRGKESEVFYELAQELPLPHSVTSNLDKASIMRLAISYLHMRKLL
STDDKTVEEEQEESEMDSQLNVSYLKALEGFLMVLSEDGDMIYLSENVNKYLGLAQFDLT
GLSVFEYTHPCDHEELREILVHRTGTSKKSKGPNTERSFFLRMKCTLTSRGRTVNVKSAT
WKVLHCSGHVAPAEQNPCGHKEPPVSYLVLVCDPIPHPSNIEAPLDTKTFLSRHTLDMKF
TYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLIKTHHNLFVKGQVSTGQYRMLAKIG
GFVWVETQATVIYNNKNSQPQCVVSVNFVLSGIEEKMVLSLEQTEDMRSVKKELVEEEEE
DEGSEAEVSPVFLKEEKVDVIKLFTQAMEPLPLASLYDRLKEEPEALNLLAPAVGDTIIS
LDFSNPDSDILLKEVPLYNDVMLPSTSDKLALPHSMQPPSEQPLIPSASVDTKAGPDSFS
TPGSHSSTEPDIALNFCFPMDSDISAALKLDLVERLFAIDTEPKTPFTSQGMEDLDLEML
APYIPMDDDFQLRTLSPEEPLSCGPAQPLESSPLCSPLHLTQDVHSYTDSPFSAPSSRTA
SPAPELAASPCPASLLTMRAPQMDREIYLRTLATQNSQRKRKLALYQAVGIVNGALLQEP
PGPGKKLKVSELGSSEAPSNRTILLLPTDLASCLLGISSEGSGSPFTLPQLTRYDCEVNA
PVVGRQHLLQGEDLLCALDQVN
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatcaacaatttatggaaacacaaattacggatttaatttgaatagctacgtg
aattttcgcttgtttttgtacgggttcgaaacacagtttatcttcttggctgaggctcaa
aataagtccgtcgtccttaaaatgaacacaagagttgtcccagaaaagaaaagcagggtg
agctcggagcggaggaaggagaagtcccgggatgcagcgcgataccggagggggaaggag
tcggaggtgttctatgagctggcccaggagctgcccctgccccacagtgtcacctccaac
ctggacaaggcttctatcatgagactggccatcagctacctgcacatgaggaaactgctg
agcacagatgataagacagtagaggaggagcaggaggagagtgagatggactcccagctg
aatgtctcctatctgaaggctctggagggcttcctcatggtgctgtctgaagacggggac
atgatctatctctctgagaatgtcaacaagtacttgggtctggcacagtttgacctgaca
ggacttagcgtgtttgagtacacacacccctgtgaccacgaggagctaagggagatcctg
gtacacagaacagggacctctaaaaagtccaagggaccaaacacagagcgtagcttcttc
ctgcggatgaaatgtaccctcaccagcagggggcgcactgtcaatgtcaaatcagccacc
tggaaggttctccactgctcaggccatgtagccccagctgagcagaacccctgtgggcac
aaggagccgcccgtgtcctacctggtgctggtctgtgaccccatcccccacccctccaac
atcgaggcgccgttggacaccaagaccttcctcagccgccacacactggacatgaagttc
acctattgtgacgagaggatcactgagctgatgggctatgatccagaggacctgttaaat
cgctctgtgtatgagtactaccatgccttggactcagaccacctcattaagacccatcac
aacttgtttgttaagggccaggtgagcacaggccagtaccgcatgctggctaagataggt
ggctttgtgtgggtggagactcaggccactgttatctacaacaacaagaactcccagccc
cagtgtgttgtctctgtcaactttgtgctcagtggcattgaggagaagatggtgctgtct
ctggagcagactgaggacatgaggtctgtaaagaaggagctggtggaggaggaagaagag
gacgagggctcagaggcagaggtgtcccctgtgttcctgaaggaggagaaggtggatgtg
attaaactgttcacccaggcaatggagcccctgccgctggccagcctgtacgacagactg
aaggaggaaccagaggccctcaaccttctggccccggccgtaggagacaccatcatctcc
ctggacttcagcaaccccgactctgacatcctgctgaaggaggtgcctctctacaacgat
gtgatgctgccctccaccagtgacaagctggccctgcctcactctatgcagccccccagt
gagcagcccctgatccccagtgcctcagtggacaccaaggcaggtccagactccttcagc
accccaggcagccacagctcaactgagcctgacatcgcactgaacttctgttttccaatg
gactctgacatcagtgctgcgcttaaactggacctggtagaaagactgtttgccatcgac
acagagcccaagacacctttcacctcacagggcatggaggacctggacctggagatgttg
gctccatacatccccatggatgatgacttccagctgcgcaccctgtccccagaggagccc
ctgtcatgtggcccagcccaacctctggagagctctcctctgtgctctcctctgcacctc
acccaggatgtccacagctacactgattccccctttagtgccccaagcagccggacagct
tccccagccccagagctggctgctagcccttgccctgcctccttactcaccatgagggcg
cctcagatggacagagagatctatctcaggacactggccacccagaactcacagcgcaag
agaaagttggctctgtatcaggctgtcggaatagtaaatggggcattgctccaggaacct
cctgggccgggtaaaaagctcaaggtgtctgagctgggcagctctgaggctccctccaac
aggaccatactgctcctacctacagacctggcaagctgcctgcttggcatctcctcggag
ggcagcggctcgccctttacccttccacagctgacccggtatgactgtgaggttaatgcc
cccgtggtgggtcgccagcacctgctgcagggtgaggatctgctgtgtgccctggaccaa
gtcaactga
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