Salmo salar (Atlantic salmon): 106611170
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Entry
106611170 CDS
T04363
Symbol
nrde2
Name
(RefSeq) NRDE-2, necessary for RNA interference, domain containing
KO
K26109
nuclear exosome regulator NRDE2
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106611170 (nrde2)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106611170 (nrde2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
GAGA_bind
Motif
Other DBs
NCBI-GeneID:
106611170
NCBI-ProteinID:
XP_014066564
UniProt:
A0A1S3SQF0
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All DBs
Position
ssa09:complement(31011367..31029044)
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AA seq
1194 aa
AA seq
DB search
MTSYSCDCLHAEAINMALFPAFAGLSNTKAENAHKELEWLSNQSFRTDDALSLHQRATEK
ANETQSAETSRLVIPEREDKNDVQSNKKKKKEKKKKKKKKKHKKKSGEPSPASSGSDSDT
IYPSDLLKKAESTPPSEEVQFQVEGSFVWLDDLQTPTDRPFCVDRRADRANWEYKSLYRG
DIARYKRKGSSSLGLDLRSQAVSWAESGPEKKRVDRRQRPNRYFSPTVRQLLMSDGKPTL
PRPPPEGTTTTLPFIPVPSCLEGEAEGGGSAKGQGSWVNPLGVYDSSTSLWLQGKGKTEH
GKTEEQPSTPRDNAAVMLAERVENFNRRLRETPTDTHTWFQFVLFQDEVAGAPGVFGDIS
ENETERRKRSVRATLEKKVAILDRAVENNPSCVELKLERLRLCRELWEPAALLKEWKKLV
FLHPNSAPLWRKYLLFMQSHFSTFSVSKVNTVYGKCLSTLAAVQDGSMVSHQVLPGTDEH
MLAIFVQQCHFLRQAGHSEKAVCLFQGLLDFTFFKPDTVKDLPTRQQVEFFEPFWDSGEP
RVGERGASGWRAWMTQQERGGWLQPSEQDDGDEEDQEELEVKDKTWPKWRIWLDVETSRE
AIHWLPWRPDKTKGQSVEDCEDPDRQVLFDDIGPSMIRLVRPDLQLCLLLSFLHFLGLPA
DTSCYSAPSCSLLLDDQALLGDVHHPDSPLTSYDLPVPGVSPVGHMTSLQGTRRGAGLCK
QGEEFVDNVFQMVLPLFSAQERAVLSLHWIQYEKLKVLRCVRGRNKKRVKSQGKRSKRLA
KRLLKEPENRGRLSLWREYAHLEWLLGNLDEAHKVFDTALGLGVAGGLADPALCDLCLLY
AQLEVEEAWRRDKGGAGTTVTTAMSSPAVYILTKLAEGSSYAPFLGQLAPVAVLKARKAY
EQAVVSSLPGLDEGAAGQGQSKKSRRVKGLVGCYALFQYLTVGVDAADAVYNLARKRLEQ
HSSMSAQESASSEVMCDIQTLSSVSECEALAVQQVALLRYHTSTNVYPLSHIRLALTSAL
AHFASSTSLWQLYVQVENRYHSAGRARRFFHSVTKASTSVVPRLFAISAEQQRKQLVDSV
QRSDCYGDTLSTLPENGLSNRIRSLFENAIATEHGVHCPLLWRMYMNFLVSEGKVEKGRG
IFYKALQDVPWAKGLYMDAVQLFPEHVQEFLDLMTEKELRLRVPMEEVDILLED
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcatattcatgcgactgtttacacgcagaggctatcaacatggctctatttcca
gcttttgcaggattatcaaatacaaaagctgagaatgcacataaagaactagaatggctg
agtaatcaaagtttccgcactgacgacgctctctctcttcaccaacgagccactgagaaa
gccaacgaaacacaatcggcagaaacaagcagactcgttataccagagagggaggataag
aatgacgtccaatccaacaagaagaaaaagaaggagaagaagaagaagaagaaaaagaag
aagcacaagaagaagagtggagaaccctctccagcaagcagtggctcagattcagatact
atctaccccagtgacctcctaaaaaaggctgagagcactcctcccagtgaggaggtgcag
tttcaggtggaggggtcttttgtgtggttggatgacctccagacccccaccgatcggccc
ttctgcgtggacaggagagcagaccgtgccaactgggagtacaaatcactttacagagga
gatatcgctaggtacaaaaggaaaggctcttcctctctgggtttggacctgcggtctcag
gccgtgagctgggctgagtctggcccagagaagaagagagtggacaggagacagagaccc
aaccgctacttctcccccaccgtccgccagctgctgatgtctgatggcaaacccacgctg
cccagacctccaccagagggcaccaccaccaccttacccttcatccctgtgccctcctgt
ctggaaggtgaggcagaggggggtggctctgccaaaggtcagggctcctgggtcaacccc
ctgggggtgtatgactcctccacctccctgtggctccaggggaaggggaagacggagcat
ggtaagacagaggaacaaccttctactcccagggacaatgctgccgtcatgctggctgaa
cgggtggagaacttcaacaggaggctgagggaaacccccacagacacacacacctggttt
cagtttgtcctcttccaggacgaggtagctggggcgcctggagtgtttggtgacatctct
gagaacgagaccgagcggcggaagaggtcagtgcgggccacgctggagaagaaggtagcc
attttggatcgagcagtggagaataacccgagctgcgtggaactgaagctggagcgactg
cggctctgtagggagctgtgggagccggcagccctgctgaaggagtggaaaaagctggtg
ttcctgcaccccaacagtgccccactgtggaggaagtacctgctgttcatgcagagccac
ttcagtaccttctccgtgtcaaaggtcaacacggtatacgggaagtgtctgagcacgctg
gcggcggtgcaggatgggagcatggtttctcaccaggtgctaccgggcactgatgaacac
atgctggccatcttcgtccagcagtgtcatttcctcaggcaggctggccactcagagaaa
gctgtgtgtctgttccagggcctactggacttcaccttcttcaagccagacactgtcaag
gacctacccaccagacaacaggtggagttctttgagccattctgggacagtggggagccc
cgtgtcggggagagaggggccagtggatggagagcctggatgacccagcaggagagaggg
ggctggctccaacccagtgaacaagatgatggagatgaagaagatcaggaggaattggag
gtgaaggataaaacctggcccaagtggaggatctggttggatgtggagacatcacgcgag
gccatccattggctgccgtggaggccggacaaaaccaagggccaatcggtggaggactgt
gaggacccggaccgacaggtgctgtttgatgacattgggccgtctatgatccggctggtc
cgcccagacctccagctatgtcttcttctgtccttcctgcacttcctgggtctgcctgct
gacacttcctgttacagcgccccctcctgtagcctgctgctggatgatcaggctctactg
ggggatgttcaccaccctgactcaccactgacctcctatgacctccctgttcctggggtc
agccccgtgggtcacatgacctccctgcagggtaccaggaggggggcggggctgtgtaag
cagggggaggagtttgtagacaacgtgttccagatggttctgcctctgttctctgctcag
gagagagctgtcctctcactacactggatacagtatgagaagctcaaggtgctgaggtgc
gtgcgcggcaggaacaagaagcgtgtgaaatcccaggggaagaggagcaagcgcctggcc
aagcgcctgctgaaagagccagagaaccggggccgcctcagcctgtggagggagtacgcc
cacctggagtggctgctagggaatttggacgaggcccacaaggtgttcgacacggccctg
ggactgggcgtggcaggagggctggcagaccctgccctgtgtgacctctgcctgctctac
gcccagctggaggtggaggaggcctggcgaagggataagggcggagcagggacgactgtt
acgaccgctatgtcttcaccagcggtctatatcctcaccaagctagcagagggtagttcg
tatgcccccttcttgggacagttggctccagtggctgtgctgaaggccaggaaggcctat
gagcaggctgtggtgagctccctgcctgggctggacgagggggccgcggggcaggggcaa
tccaagaagtccaggcgggtcaaaggtctggtggggtgttacgccctattccagtacctg
actgtgggggtcgatgctgctgatgcagtctacaacctagccaggaagaggctggagcaa
cactccagtatgtcagcccaggagtcagctagcagtgaagttatgtgtgacatacagaca
ctgagctctgtctcagagtgtgaggccctggctgtccagcaggtggcgctgctgcgctac
cacaccagcaccaacgtgtacccgcttagccatatcagactggcgctgacctcggccctg
gcccactttgcctccagcacttctctgtggcagttgtatgtgcaggtggagaaccgctac
cacagcgccggcagggctcgccgcttcttccacagcgtgaccaaggctagtaccagtgtc
gtgccacgcctgttcgccatcagcgcagagcagcaaaggaagcagctagtggactctgtt
cagaggtctgattgctatggcgacaccctctccaccctgccagagaacggcctgagcaac
cgtatccgctcgctatttgagaatgccatagcaacagagcacggggtccactgtccgttg
ctgtggaggatgtacatgaacttcctggtgtcagaggggaaggtggagaagggaagaggg
atcttctacaaggctctacaggacgtcccatgggccaagggtttatacatggacgcggtg
caactcttccctgagcacgtgcaggagttcctggacctgatgacagagaaggagctcaga
ctgagggttcccatggaggaggtggacatactgctggaggactga
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