Salmo salar (Atlantic salmon): 106611471 Help Entry 106611471         CDS       T04363                                  Symbol vps39 Name (RefSeq) VPS39, HOPS complex subunit   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa04140   Autophagy - animal sasa04148   Efferocytosis sasa05132   Salmonella infection Brite KEGG Orthology (KO) [BR:sasa00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     106611471 (vps39)    04148 Efferocytosis     106611471 (vps39)  09160 Human Diseases   09171 Infectious disease: bacterial    05132 Salmonella infection     106611471 (vps39)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sasa04131]     106611471 (vps39) Membrane trafficking [BR:sasa04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     106611471 (vps39) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Vps39_2 Vps39_1 CNH Clathrin WD40_like zf-FCS Motif Other DBs NCBI-GeneID:  106611471 NCBI-ProteinID:  XP_014067184 UniProt:  A0A1S3SS76 LinkDB All DBs Position ssa09:complement(47331128..47362090) Genome browser AA seq 879 aa AA seqDB search MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK NFSKKIQQLFVVSQYKILISLLENNIHVHDLLTFQQITVVSKARGATLFACDLQQSPSGE AQLRMCVAVKKKLQLYYWKDREFYELQGDFAAPDIPKSMAWCQNSICVGFKRDYYLIRMD GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME HQSPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI ASQIRQLLQDKQFELALQLANMKDDVEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK LGTDPTHVIGLYPDLLPTDYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKQL NDSNPSTPSPLMEGIPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLDNNHCHIEES EYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENLV IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAVPYLEHIIHVWE ETEPEFHNVLIQMYLERVQGLMKQYLNFLPEGVPAVAAGKEEGDLGEFRNKLLCFLEVST SYEPGRLISDFPFDGRDGLLEERALLLGRMGKHEQALFIYVHVLKDTHMAEEYCHRHYDK ETDRNQDVYLSLLRMYLSPPDVHCLGPIKMELLEPQANLMAALHVLELHHSKLNTTKAID LLPANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCIITEE KTCRVCKKKIGNSAFARYPNGVVVHYFCCKDRAVCPTEQ NT seq 2640 nt NT seq  +upstreamnt  +downstreamnt atgcatgacgcttacgaaccggtccctatcctggagaaactgcctcttcagattgactgt cttgctgcttgggaggactggcttctggttgggactaaaccaggtcatctcctgctctac aggataaaaaaggatgcaggtaccaacaggtttgaggtgacgctggagaaatccaacaag aacttctccaagaagatccagcagctgtttgttgtgtcacagtacaagatcctcattagt ctgttagagaacaatatccatgtccatgaccttttgaccttccagcagattactgtggtc tccaaggccagaggggcaacgctcttcgcctgtgacctgcagcagtccccgtcgggagaa gctcagctgaggatgtgtgttgctgtgaagaagaagcttcaactgtattactggaaggac agggagttctacgagctgcagggggactttgctgctccagacatccctaagtccatggcc tggtgtcagaactccatctgtgttggcttcaagagagactactacctcatccggatggat ggtcgtggctccatcaaggagctcttccccacggggaagcagctagagcccctggttgcc cccctggctgatgggaaggtggcggtgggccaggatgacctcacggtggtgctcaacgag gagggggtctgcactcagaagtgtgctctcaactggaccgacatccccatcgcaatggaa catcagtccccctacatcatagctgtcctgccccgctatgtggagatcaggacctttgaa cccagactgctggtccagagtgtggagctgcagagaccacgattcatcacatcagctggg cccaatatagtgtacgttgccagcaaccattttgtctggcgcctggtacctgtgtccatc gccagccagatcagacagttactacaggacaagcagtttgaactggccctgcaactggct aatatgaaggatgatgtggaaggtgataagagacagcagattcaccacattcagaatctc tatgccttcaatctgttctgtcagaagaggttcgatgactccatgcaggtgttcgccaag ctcggcacagatccgacccatgtgattggtctgtatccggacctgctccccactgactac cgtaaacagctgcactaccccaaccctttacccagtctgtctggagcagagctggagaag gctcacctcgcactcatcgactacctgacgcagaaacgcagtcacctggtgaagcagctg aatgactcgaacccgtccacgccgtctcccctcatggaaggaattcccaccatcaagagc aggaagaagcttctgcagattatcgacaccacgctgctcaaatgctacctgcataccaac gtggccctggtgtcccctctgttgcgtctggataataaccactgtcacattgaggagagt gagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctctatgagaagaag ggcctgcatcagaaagccctgcaggtgttgttggatcagtccaccaaggctaactctcct ctaaagggacatgagaggacggtgcagtacctccagagactggggatggagaatctggtc attatctttgagttctctccctgggttctgaagatctgtcctgaggacggactcaagatc tttactgaagacctgacggaagtagagacccttcccagagacaaggtcctgaacttcctg aaggagggttttaaggagctggctgtcccctacctggaacacatcatacacgtctgggag gagaccgagccagagttccataacgtcctcattcagatgtacctggagagggtccagggg ctcatgaagcagtacctcaacttcctgccagagggggttcctgcagtggctgctgggaag gaggagggggacctgggagagtttaggaacaagctgctatgtttcctggaggtctctacc agctacgagcctggacgtcttatcagtgacttcccctttgatggtagggatggtcttctg gaggagcgggccctgctgctgggtcgcatggggaaacatgaacaggccctcttcatctac gtacacgtcctgaaggacacacacatggcagaagagtactgtcataggcattatgacaaa gagacggacagaaaccaagatgtgtacctgtctctactgcgcatgtacctgtcccctcct gacgtccactgtcttgggccaatcaaaatggagctgttggagccacaggccaatctaatg gcagctctacatgtcctggagcttcaccacagcaaactgaatacaactaaggccatcgac ctgctgccagccaacactcagatcagagaaatccgtgtgttcttggagagtgttctggag gagaaggctcagaggaaacgttttgaccaggtcctcaagagtctgctgcaggccgagttc ctacgggtccaggaggagcgtatcttccaccaacaggtgaagtgtatcatcacagaggaa aagacctgcagggtctgtaagaagaagataggaaacagcgccttcgccaggtatcccaat ggtgttgtagttcattatttctgctgtaaggaccgagcggtgtgtcctacggagcagtga

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