Salmo salar (Atlantic salmon): 106611642
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Entry
106611642 CDS
T04363
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa02010
ABC transporters
sasa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
106611642
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106611642
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sasa02000
]
106611642
Transporters [BR:
sasa02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
106611642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
106611642
NCBI-ProteinID:
XP_014067539
UniProt:
A0A1S3ST70
LinkDB
All DBs
Position
ssa09:60083877..60131107
Genome browser
AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKDLIQALKTLQANTKGFKLKDFLHDNETLSTFLLRNASFSEHAMHQIIEADVNLE
KVLIKGFGVHLRDMCKSNGTSVEDFVTITDSEVSSLVQEILCRSPGSWLNQAESHFLNNL
DFLKPIRKDVRADPEAVQQVAEATDNLLESLGSLAIELASMKSWSDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNYKALFGNHNTTDGEEPISAYDNASTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPVTPATQKIIHEVNRTFQELGVLRELG
GMWEEVRPKVWTFMENSEQMDLVRTLLKNNGTARFFTSQLAGTEWTVEDVSNFLTKHSED
TRPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPAIVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITVVTGAKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISASLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKLVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFTKSYWFGERDNRKTDFSQNKRRNYEAVCIEEEPA
HLKPGVFIENLVKVYPHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLLHKRTSKTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLHYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPSLSSFHNSSSTVSFTKKEEDCPSESSSDAGLGSEHESEAATIETAQAASICESAFVP
PDVSLISSLIFKHVPAARMVEDLGHELTYILPYGAAKDGAFVELFKDMDDRLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTELPSDGTLPMPRRRIHHAFGAGNAFGGDHQSCLRPQID
DDNNEHNDSDAYPESRETDFLNGSDGKGSYQVKGWSLTRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDANTQRLLSA
LTEGPGFGTRCMEGQPITDTHCTMGDEDWTIPEVPESLLELFRTGNWTMEVPSPACACSC
DGRKKMLPECPTGAGGLPPPQMKISETDTLQNLTGRNISDYLVKTYAEIIGKSLNNKIFV
NEFRYGGFSLGARSTQVLPPAGEVDDAIARVRKIFELEKGAAADRFLESLSSFINGLDTK
NNVKIWFNNKGWHSMGAFLNVMNNGILRANLPPGKDPSKFGIRTFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFSMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSIVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHL
EFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPSVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGPDPDLPPVMKFIESKLPGSTLKEKHRNMLQYQLSSSLTSL
AHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVVDITPL
SSRQAEEKLAEERLNESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgctgttgtggaagaactttacctacagaagaagg
caaacgctccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgagtgtcatttccccaacaaggcc
atgccctcggcaggcaccctgccgtggatccaaggcatcatctgcaacgccaacaacccc
tgcttccgcaaccccactcctggagagtcccctggggtcgtgggcaacttcaatgagtcc
ataatctctcgtttgttctcggatgccaagaaaatcctgctgtacagtcagaatgaccgg
aatctggacggctttaaagaccttatccaggccctgaagaccctacaggccaacaccaaa
ggattcaagctgaaggatttcctccacgacaatgagaccctgtccacttttcttctgcga
aacgcctccttctcggaacacgccatgcaccagatcattgaggccgacgtgaacttggaa
aaggtgctgatcaaaggcttcggtgtccacctgagggacatgtgcaaaagcaacggcacc
agtgtggaggactttgtgaccatcacagacagcgaggtgtccagtctggtccaggagatc
ctctgccggtccccaggctcctggctcaaccaagcagaaagccacttcctcaacaacctg
gacttcctcaaaccaatacggaaagatgtgagggctgaccctgaagctgtccagcaagtg
gctgaggctacagacaaccttctggagagcctggggtccctggccattgagctggccagc
atgaagagttggagcgacctgcgtaacgagatcatcttcctcactgagaacgccacgtcc
tcccccagccacatgtaccaggccgtgtcgcgcatcgtctgcggccaccccgagggcggc
ggactaaagatcaagtccctcaactggtacgaggacagcaactacaaggccctgttcggc
aaccacaacacaaccgacggagaggaacctatctctgcctacgacaacgcatccactcca
tactgcaatgcaatgatgaggaacatggagtccagccccgtatccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctatatacccctgtcactcccgccacacag
aagatcatccacgaggtgaacagaacgttccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaggtgaggcccaaggtctggaccttcatggagaatagcgaacagatg
gacctagtaaggaccctactgaagaacaatggaaccgccaggttcttcacctcccaactg
gcgggcacagagtggaccgtggaggatgtctccaacttcctgaccaaacattcagaggac
acacgtccccacggcaccgccttcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatatcccgcttcatggagtgtgtaaacctggataagatggagcccgtggcc
aatgaggaaaggatggtcaacaaatccatggcactcctggacgacaggaagttctgggcg
gggatcgtgtttcccgacattgaggccaacagctctgaactgccggccattgtcaactac
aagatccgcatggacattgataatgtggagcgcaccaacaagatcaaagacggatattgg
gaccccggtcctcgtgccgacccctttgaggacctgcgctacatctggggcggcttctct
tacctccaggacatcatcgaacacagcatcatcacggtagtgactggcgccaaggagaag
acgggagtctacatccaacagatgccctacccctgctacgtggacgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagcgtggtttacgagaaggaggcgaggctcaaggagaccatgaggatcatg
ggattggacaacggcatcctgtggttcagctggttcatcagcagcctcatccccctgctc
atctccgccagtctgctcgtggtgctgctcaagatggggaacctgctgccctacagtgac
cccggtgtcatcttcctgttcctgggttccttcgccgtggtaaccatcatgcagtgcttc
ctcatcagcaccatgtttgcccgtgccaacctggcggcagcctgtgggggtatcatctat
ttcaccctctaccttccctacgtcctctgtgtggcctggcaggactacgtgggctttggg
gcaaaattagtcgctagcctgctgtccccggtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccaatggaacaacctgttcaacagccccatg
gaggaggacgacttcagcctgaccaccgccatcatcatgatgtactttgactccttcctc
tacatggtgatgacctggtacatcgagtccgtcttccccggtcaatatggtattcccagg
ccctggtacttcctcttcaccaagtcctactggtttggagaacgagacaacaggaagact
gacttcagtcagaacaagagaagaaactatgaagctgtctgtatagaggaagagccagcc
cacctgaaacctggcgtcttcatagagaacctagtcaaggtgtacccgcacgggaagaag
ctggctgtggacgggctgactctgggcttctacgagggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccaccatgtcgattctaacgggactgtttccccctacc
tctggaactgcttacatcatgggcaaagacatccgatcggagctgagcgctattcgacag
agtctgggcgtttgtccacagcacaacgttctcttcagcatgctgaccgtggaggagcac
atctggttttacgctcgtctgaagggtctatctgaagaacaggtgaagtctgagatcgaa
cagatcttgatagacactggcctgctgcacaaacgcacttccaagaccagcacactgtcc
ggagggatgcagaggaagctctctgtggctctggcctttgtcggggggtcaaaggttgtg
attctggacgagcccaccgctggggtcgacccctacgcccgccggggcatctgggacctc
ctgctccattatcgtcaaggtcgtaccatcatcctctccacccaccacatggatgaagcg
gacatattgggcgaccgcatcgccataatctcccatggcaagctttgctgcgtgggctcc
tccctcttcctgaagaatcagctgggtacaggctactatctgaccctggtcaagaagggc
ccagaaccttccctcagctccttccacaactcctccagcaccgtctccttcactaagaag
gaggaggattgtccctccgagagcagctctgacgcaggccttggcagcgaacacgagagc
gaagcggccaccatcgaaactgcccaggctgcatccatctgtgaaagtgccttcgtgccc
cccgacgtctccctgatctcaagcctgatcttcaagcatgtcccagccgcccgcatggtg
gaagacctgggccacgagctcacttacatacttccctatggcgcagccaaggacggagcc
ttcgtggagctcttcaaggacatggacgaccgtctccccgacctaggcatctccagctac
ggtgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaatggagtt
gacactgaactcccctctgacggtaccctccccatgcccagacgtcgcatacatcatgct
tttggtgcaggaaatgcctttggtggagaccaccagagctgccttagaccccagatagac
gatgacaacaatgaacataacgactcggacgcatacccagaatccagagagacagacttc
ctgaacggctcggacggtaaaggctcctaccaggtgaaaggctggagtctgacgaggcag
cagtttgtcgccttgatatggaagaggttcctgtatgctcaacgctccagaaaaggtttc
tttgctcagattgtgctccctgcggtgttcgtttgcattgccctggtcttcagtctaatc
gtcccgccctttggaaaataccccagtctggagctgcagccgtggatgtacgaagaacag
tccctcttcatcagtgatgatgcccctgaagatgccaacacacaacggttattaagtgcc
ctcaccgaaggccctgggtttggaacgcgttgcatggaagggcagccaataactgacact
cactgtacgatgggtgacgaggactggaccataccggaggttccggagagccttctggaa
ctgttccgcacgggaaactggaccatggaggttccgtcccccgcatgcgcctgcagctgt
gacggccgcaaaaaaatgctccctgagtgtcctactggagccggaggactgccaccacct
cagatgaagatcagcgagacagacaccctgcaaaacctgaccggcagaaacatctctgac
tacctagtaaagacctatgcagagatcattgggaaaagtttgaacaacaagatctttgtg
aatgaatttaggtacggtggcttttcattgggcgccaggagcactcaggttctcccccca
gctggcgaggttgatgacgctatcgctcgagtgaggaagattttcgaattggagaagggt
gctgccgcagaccgattcctggagagcttgtctagcttcatcaatggtctggacaccaag
aacaatgtcaagatttggttcaacaacaaggggtggcacagcatgggagcctttctcaac
gtgatgaacaacggcatcctgcgcgccaacctgccccctggcaaggaccccagcaagttt
ggcatccgcaccttcaaccaccctctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtgctggtgtccatctgcgtgatcttctccatgtccttc
gtcccagccagcttcgtagtcttcctcatccaggagagagtgagcaaggccaagcacatg
cagttcatcagcggcgtgcagcccctgctctactggacggccaacttcatctgggatatg
tgtaactacatcgtcccggcgacactcgtcatcatcatcttcgtgtgcttccaacaaaag
gcctacgtgtcgtccaccaacctgccagtgctggccctgctgctgctcctctacggctgg
tctatcactcctctgatgtacccggcgtccttcttctttaagatccccagcacggcctac
gtggtgctcacctccgtcaacatcctcatcggcatcaacggcagcatctccacctttgtc
atggagctctttggaaacaacgagattggaggtatcaatgacatcctgaagaacgttttg
ctgatatttcctcacttctgtttgggtcgaggcctcatcgacatggtgaagaaccaagcc
atggccgacgctctggaaagattcggtgagaaccgcttccgatcccctctggaatgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtcctcatccagtaccgcttctgcatcaagcccattaacctgcacaccaagctccctccg
gtaggcgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacggactggga
cacggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcagaagccg
gcggtggaccgcctgtgtgtgggcatccctcctggagagtgctttggcctcttgggtgtg
aacggagctggaaagaccaccaccttcaaaatgctgacaggagactccatagtcaccagt
ggagaggctttcctggccggaaaaagtatactgcgggagatagacgaggtgcaccagaac
atgggctactgccctcagtttgacgccatcaacgacctgctgacgggaagagagcacttg
gagttctatgccgtcctgcgcggcgtgcccgagaaggaagtgtgcgaagttgccgaatgg
ggcatccgtaagctgggcctagtaaagtatgtggacaaggcagcaggaagctacagcgga
ggaaacatgaggaaactctccaccgccatggccctgataggaggaccatccgtcgtgttc
ctggacgagcccaccactgggatggaccccaaagcacgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccctgtgcaccagaatggccatcatggtcaatggcaggttccgctgcttggggagt
gttcagcacctaaagaacaggttcggagacggctacaccatcattctgcgtgtggctggg
ccggaccctgacctgccgccggtgatgaagttcattgagagtaagctgcctggcagcacc
ctgaaggagaagcacaggaacatgctgcagtaccagctgtcctcctcactcacctccctg
gcacacatcttcagcatcctggccaagaacaaggaccttcttcggatagaggactactcc
gtgtcgcagaccacactggaccaggtttttgtgaactttgccaaggaccagagtgacgat
taccactcaaaagacaattcagtaaagcgcaaagaggcggtggtggacattaccccgctc
agctcacggcaggctgaagagaagctagccgaggagaggctaaatgagagcttggtgtga
DBGET
integrated database retrieval system
