Salmo salar (Atlantic salmon): 106611671
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Entry
106611671 CDS
T04363
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
106611671
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sasa04040
]
106611671
Ion channels [BR:
sasa04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
106611671
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
106611671
NCBI-ProteinID:
XP_014067594
UniProt:
A0A1S3STD1
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Position
ssa01:complement(98981184..99196699)
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AA seq
1337 aa
AA seq
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MPKGKHSYYPDSPSIRISKMDVIIPFSPDVPCDSNGQRMWWAFLASSMVTFFGGLFIILL
WRTLKYLWTVCCHCNTKKKNAQRVHNPTSHGDGIKHTKETVAALSEVGWMTSVKDWAGVM
ISAQTLTGRVLVVLVFALSIGALVIYFIDSSDPIESCQNFYKDFTLQIDMAFNVFFLLYF
GLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFL
NILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQALSYWECVYLLMVT
MSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRKH
IVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGS
VLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYH
NKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTW
QKYYLEGVANEMYTEYLSSAFVGLSFPTICELCYVKLKLLLIAIEYKSDIRESSTLINPG
NHVKMQEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIKKCGCKRLLYSKMSVYKRM
MLACCFDCGHSECDCSCMSANVHHDSSTKDTLQQRGFPLSPVSLNDFSTTLSASKNNYNG
YIKSIKDNTHIKRSTYQNKSIKLNHNSTANAAHHKVATPHSGVVLPGSGSGSGSVPLVNN
RKGSLQPSRGPSVLRRSLLGSRELVEVARGPGGPGGLAAEEASRLQRARSLPVKYRYQLS
HSSNATLLNMRHCTFEEEQHSTLSPKKKQRNGNTRNSPNGSPKMMRHDPLLMPGNEQIEN
MDMNVKKYDSTGMFHWCQSKDIEKVILTRSEAAMTVLSGHVVVCIFGDAKSALVGLRNLV
MPLRASNFHYHELKPIVFVGSLEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCD
MCVILSANQNNIDDASLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPEN
SPLHGGLVRQASITTGANIPIITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAV
SVLDSLMSATYFNDNILTLIRTLVTGGATPELEGLLAEENALRGGYSTPQTLANRDRCRV
AQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLNTQSHTSQCTKRYVI
TNPPYGFELVPSDLIFCLMQFDHNAGQSRASLSHSSHSSHSSSKKSSSVHSLTATNRTNR
AKNRDSRDKQKKDMVYR
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaaggtaaacatagttactacccggactctccctctatccgcatatccaagatg
gatgtgatcatcccgttctccccagatgtgccctgtgatagcaacgggcagcgcatgtgg
tgggctttccttgcctcctccatggtcacgttctttggaggtctcttcatcattctgctc
tggagaactctcaagtacctgtggaccgtctgctgccactgtaacaccaaaaagaagaat
gctcagcgggtccacaaccctacctcccatggggatgggatcaagcacaccaaggagacg
gtggctgcactcagcgaggtgggctggatgacctccgtcaaagactgggccggggtcatg
atatcagcccagacactgacgggcagagtcctggtggtgcttgtctttgccctcagcatc
ggagcccttgtaatatacttcatagattcctctgaccccatcgagtcctgtcagaacttc
tacaaagacttcacactacagattgacatggctttcaacgtcttcttcctcttgtacttt
ggtctacggtttattgcagccaatgacaagctgtggttctggctggaggtgaactcagtg
gtggacttcttcactgttcccccggtgttcgtgtcagtttatctcaacaggagctggctt
ggcttgaggtttttaagggcgttaaggttgatacagttctcagaaatcttacagtttttg
aacatattaaaaactagcaattccataaaactggtgaacttatgttcaatcttcataagt
acatggctaacagcggcaggcttcatacatctggtggaaaactcaggggatccttgggaa
aacttccaaaattcccaagcactttcctactgggaatgtgtctacttactcatggttact
atgtccactgtgggctatggagacgtgtatgcaaaaaccaccctgggacgacttttcatg
gtcttcttcatccttggtggtttggccatgtttgcgagctacgtccctgaaatcatagag
ttaataggaaaccgcaagaaatatggtggttcctatagtgcggttaatgggagaaagcac
atcgtggtctgtggtcatataacacttgaaagtgtgtccaacttccttaaagacttccta
cacaaggacagggatgatgtcaatgtagaaattgtttttctccataatatttcccctaat
cttgagctggaagccttgtttaaacgccacttcacccaggtggagttctaccagggatct
gttctcaacccacatgacctggccagagtcaagatagagtcagcagacgcctgtttgatc
ctagctaataaatactgtgcagaccctgatgctgaggatgcctccaacatcatgagggtg
atatccatcaagaactaccacccaaaaatcagaatcattacccagatgttgcagtaccac
aacaaggcccaccttttgaacattcccagttggaactggaaggagggtgacgatgccatt
tgccttgctgagctgaagttgggcttcatagcacagagctgtctggctcagggcctgtcc
accatgctggccaacctcttctccatgaggtccttcatcaagattgaagaggacacgtgg
cagaagtattacctggaaggagtagccaatgaaatgtacactgagtacctgtctagtgcc
tttgtgggcttatccttcccgaccatttgtgaactctgctatgtgaagctgaagctgcta
ctgattgctatcgagtacaagtctgatataagggaaagcagcaccctcatcaaccccggg
aaccatgtgaagatgcaggaaggaaccctggggttctttatcgccagcgatgccaaagaa
gtaaaaagggcacttttttactgcaaagcttgtcacgatgatatcacagatcccaaaagg
ataaagaaatgtggatgcaaacgattgctttattccaagatgtccgtctacaagagaatg
atgctggcatgttgttttgattgcggccattcagagtgtgactgctcttgcatgtcagcc
aatgtgcatcatgatagtagcacgaaggacacccttcagcagcgtggcttccctctctct
cctgtctctcttaatgatttctcaaccactttaagtgcctcaaaaaataactataacgga
tatatcaaatcaattaaagacaacacccatatcaaaaggtcaacctatcagaacaagtct
attaaattgaaccacaactccacggccaacgcggcccaccataaagtagcaacgccccac
agtggagtagtactgcctggctctgggtccggctctgggtcagttcctctagtcaacaac
cgtaaaggaagcctgcagccttccagggggccctcagtgctgaggcgtagcctcctgggt
tccagagagctggtcgaggtggcgaggggaccaggtggaccaggggggctggcagcagag
gaggccagcaggctccagagggcacgcagcctgccagtgaaatacagataccagctcagc
cactccagtaatgccaccctgctcaatatgagacactgtacattcgaagaggagcagcat
tcgacattgtcgcctaaaaagaaacaacgcaatggaaacacaaggaactcacccaacggt
tcaccaaaaatgatgaggcatgaccctctcctcatgccgggaaacgaacagattgagaac
atggacatgaacgtgaagaagtacgactccacagggatgttccactggtgccagtccaaa
gacatcgagaaggtcatcttgaccagaagtgaagctgccatgactgtcctaagcggccac
gtggtcgtctgtatatttggagacgcgaagtcggctttggtgggcctaaggaaccttgtg
atgcctctgagagctagcaacttccactaccacgagctgaaacccatcgtgtttgtgggt
tctctggagtatctgaagagggaatgggagacccttcacaacttccccaaagtctccatc
ttacctggcacaccattaagccgggccgatctgagggctgtcaatatcaacctctgtgac
atgtgtgtcatcctgtcggccaatcagaacaatattgacgacgcgtcactgcaggacaag
gaatgcatcctggcgtcactcaacatcaagtccatgcagtttgacgatagcatcggggtc
ttgcaggctaactcccaaggtttcactcctccaggcatggacaggtcctctcctgaaaac
agtccacttcatggggggttagtccgacaggcttccatcacaacaggagccaacatcccc
atcatcactgaactagtgaatgactccaatgttcagttcctggaccaggatgatgatgat
gaccctgacacagagttgtacctcactcagcccttcgcctgtgggacggccttcgcagtc
agtgtgctggattccctgatgagtgcgacatacttcaatgataatatcctcaccctgatc
cggacgctggtaacagggggggccactccggagctggagggtctgttggcggaggagaac
gcattacgaggaggctacagcacgccgcagaccctcgctaaccgggacaggtgtcgtgtg
gcacagctagccttgtacgacgggcctttcgctgacttgggagatggtggttgctacggt
gacttattctgtaaagcgttaaaaacatacaacatgctgtgcttcggaatttatcgatta
agagacgcacatttaaacacacaaagtcatacaagtcaatgcactaaacggtatgtgata
accaatccgccatatggttttgagttggtgccatcagacctgatcttctgcctgatgcag
tttgaccacaatgcgggtcagtccagggccagcctctcccacagctcccattcctcccat
tcttccagcaaaaagagctcctccgtccattctctcactgccaccaaccgtaccaaccgc
gccaagaacagggactcgcgggacaaacagaaaaaagacatggtttacagatga
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