Salmo salar (Atlantic salmon): 106611702
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Entry
106611702 CDS
T04363
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
sasa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106611702
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106611702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106611702
04121 Ubiquitin system [BR:
sasa04121
]
106611702
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106611702
Enzymes [BR:
sasa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106611702
Spliceosome [BR:
sasa03041
]
Complex B
Other components
Prp19 complex
106611702
Complex C
Prp19-CDC5 complex
106611702
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
U-box type E3
106611702
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
106611702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
U-box
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
PROPPIN
Beta-prop_DCAF12
eIF2A
B-prop_COPA_B_2nd
RMC1_N
Cytochrom_D1
Beta-prop_LRRK2
Nucleoporin_N
Mala_s_1-like
zf-Nse
ATG16
Motif
Other DBs
NCBI-GeneID:
106611702
NCBI-ProteinID:
XP_014067664
UniProt:
A0A1S3STJ6
LinkDB
All DBs
Position
ssa09:65551840..65558404
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKFIAENGVDPMNGQPLSEEQLIDIKVSHP
IRPKAASATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAMPASQPAAGGAGGEPMEVSEQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILCMDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCV
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEAAGVALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GVAFGDNAQFLSSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgcgcaatttccaatgaggtcccggagcacccctgcgtgtccccggtg
tccaaccaggtgttcgagcgccgactgatcgagaagttcatcgcggagaatggagttgac
cccatgaacggccaaccactgtccgaggagcaacttatcgatattaaagtgtctcatcct
atccgaccaaaggctgcctccgctaccagtattcctgccatactcaagtctctgcaagat
gagtgggatgcggtgatgctccacagtttcactctgaggcagcagctgcagacgactcgc
caggagctctctcacgccctctaccagcatgacgcagcctgcagagtcatcgcccgtctc
accaaggaggtcactgcagccagagaggccctggccacactcaagccccaagccggattg
gtcgcccctcaggctatgcctgcctctcagccagccgctgggggtgcaggtggggagccc
atggaggttagtgagcaggtgggaatgaccccagagatcatccagaagctccaagataag
gccaccgtccttaccacagagagaaagaagagaggcaagactgtgccagaggagctggtc
agggctgaggatctgagcaagtaccgacaagtggcttcccacgctggtcttcatagcgcc
agtgtcccaggaatcctgtgtatggacctctgtccttcagatactaacaaagtactcact
ggaggggctgataagaacgtggttgtgtttgataagaaggaggagcagatcatcgccacc
ctcaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtcggtggtg
ttctctgcctctccagacagcaccatccgggtgtggtctgttaccgggggtaactgtgtc
caggtggtgagagctcacgaggcgagcgtgaccgggctgtcacttcacgccaccggagac
tacctgcttagctcctctgaggaccagtactgggccttctctgacatccaaactggccga
gtccttaccaaagtcactgatgaggctgctggtgttgctctgacttgtgctcagttccac
cctgacggtctgatcttcgggacgggaacagctgactcccaaatcaagatctgggatctg
aaggagcgcaccaacgtggccaacttccccggccactctggtcccgtcacctccatcgcc
ttctctgagaacggatactacctggccacaggtgcccaggacagctctgtgaagctgtgg
gatctgaggaaactgaagaacttcaagaccatcgccctggacaacaactacgaagttaag
tctctggtgtttgatcagagcggtacgtacttggctgtgggtggatctgacatcagggtg
tacatctgcaagcagtggtcggaggtcctaaacttcagtgaccactctggcctggtgacc
ggcgtggcgtttggagacaatgctcagttcctttcctccgccggaatggacagaagcctt
aagttctacagcctgtaa
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