Salmo salar (Atlantic salmon): 106612266
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Entry
106612266 CDS
T04363
Name
(RefSeq) protocadherin-11 X-linked-like
KO
K16498
protocadherin delta 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
106612266
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sasa01009
]
106612266
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sasa04515
]
106612266
Protein phosphatases and associated proteins [BR:
sasa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106612266
Cell adhesion molecules [BR:
sasa04515
]
Cadherins
Protocadherins
106612266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
DUF6377
Motif
Other DBs
NCBI-GeneID:
106612266
NCBI-ProteinID:
XP_014068745
UniProt:
A0A1S3SWN8
LinkDB
All DBs
Position
ssa09:86612218..86765714
Genome browser
AA seq
1038 aa
AA seq
DB search
MIMDLAGQAHVLVVLLTCLVMLSLAQEKDYTVREEQPENVRIGNLRKDLDLNLDPDLKLS
SPLQFKPVYKTGDVPLVRVEANTGEIFTTAHRIDREKLCSRVFNEKRCFYEIEVAVLPDE
IFRLVKIRFLIEDINDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYEL
VKSVSEFGLDIIETPEGDRWPQLIVQQSLDREQKDTFVMKIKVEDGGTPPKSSTAILQVT
ISDVNDNRPVFKDSEVEVTIPENAPIGTSVTQLHATDTDLGSNAQIHFSFSNQISSSTKR
HFAIDSTTGLITVKQPLDRESTPVHKLIVLASDGSSTPSRAAVIVNVTDINDNVPSIDTR
YIMNLVNGTVLLSENAPLNTKIALITVTDKDADLNGKVTCYTDHDVPFRLKPVFNDQFLL
ETAAPLDYETTREYAIKIVASDSGKPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPEN
NDPSTQLIKISAMDADSGHNAEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQEKYSF
TVMARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDSD
AGDNSVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAIDGGQPPSTSYAK
VTINVVDVNDNRPIFVIPSSNYSYDLVQSTTSPGSVVTRVFAIDNDTGMNAELQYSFIGG
SPRGLFAIDKTTGNITLQEKIVSADQGLHRLVVKVKDLGQPESLHAIALIHLFINETVSN
ATFIQEQLRKSLETPLDRNVGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTALVRCRQ
TPRHKVVQKGKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVSIEESKPDDPSQEHI
NGTLDLPVELDEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPMAPNKH
HVIQELPLDNTFVVGCDSHSKCSSTSSDPYSVSECSCQGGFKTPGQIHTRQETVLKPPLY
DTLCGSGTTRCHRIKINL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgattatggacttagcaggtcaggctcatgtgttggtggtgttgctcacctgcctggtc
atgctgtccttggcccaagagaaggactacacggtgagggaggagcagcccgagaatgtc
cgcatcgggaacctgcggaaggacttggacctgaaccttgaccctgacttaaagctgtcc
tcgccactgcagtttaagcctgtctacaaaacgggcgatgtgcctttggtgagggtagag
gccaacactggggagatcttcaccacggctcaccgcatcgaccgcgagaagctctgctcg
agagtattcaacgagaagcgctgcttctacgagatcgaggtcgccgttctgcctgacgag
atcttccgtctggtcaagatccggttcctgattgaggacatcaatgacaacgctccactc
ttccagtccaccgttataaacatatccatcccagagaatacagccatcaacacccggtac
cccgtgccctctgcatttgacccagatgtggggatcaatgggatccaacactatgaactt
gtcaagagtgtgagtgagtttggcctggacatcatcgagaccccagagggagacagatgg
cctcagctgattgtccagcagagcctggaccgcgagcagaaggacaccttcgtcatgaag
atcaaggtggaggacggaggaacgccacccaagtccagcacggccatcctccaggtcacc
atctccgacgtcaatgacaatcgaccggtcttcaaggacagtgaggtggaggtgaccatc
cccgagaatgcccccataggaacctccgtcacccagctccacgccacagacacagacctc
ggctccaacgcccagatccacttctccttctctaatcagatctcctcatccaccaagagg
cattttgccatagacagcaccaccgggctgatcactgtcaagcagcctttagaccgggaa
tccaccccagtccacaaactcatcgtcctagccagcgacggtagctccaccccatccaga
gctgctgttatcgtcaacgtaacggacattaatgacaacgttccgtccatagacactcgg
tacataatgaaccttgtaaatggaacggttctactgtcagagaacgctcctctcaacaca
aaaatagccctaattacagtgacggacaaggacgctgatctgaacggaaaagtgacttgt
tatactgaccacgatgttcctttcaggttaaagccagtatttaatgaccagttcctgctg
gagactgcggcccccctagattacgaaacaaccagggaatatgcaattaagatagtggcg
tcggattcggggaagcctcctttgaacacttcagcgatggttttaattaaaattaaggat
gagaatgacaacgctcccatcttccctcagcctgagattcagctgtccataccagaaaac
aatgatccatccacgcagctcataaagatcagtgccatggatgcagacagcggacataat
gcggagattatttattctcttggccctgacgctcctgatgggtttaacatagatcgacgg
tcaggaatcctctccgttggcaaacgcctggatagagagaagcaggagaagtattcgttc
actgtcatggcaagggacaatgggtctacttccctgcagagcaatgtcacagtgaggttg
atagtgcaggacctcaacgacaacagcccagctttcacccatcctgagtataacttctac
gtgcctgagaacctgcctctgtacgggaccgtgggtctgatcaccgtcacagattctgac
gcaggtgacaactctgtcataacactgtccattctgaacgggaaagacaatttcattatt
gatccccagaccggtgtgatcaaacccaacatcacatttgatagagagcagcaaagctca
tacacttttatggtgaaggctatagacggagggcaaccacccagcacttcatacgccaag
gtcaccataaatgttgtggatgtcaatgacaatcgacccatttttgttattccctcgtcc
aactactcttacgatctggtccagtctaccaccagccctgggtctgtggtcaccagagtg
ttcgctatagacaatgacactggcatgaatgctgagctgcagtacagtttcattggggga
tcaccaagaggactgtttgccatagacaaaacaactggtaatataactctgcaggagaag
atagtctcagccgatcagggtttacacaggctagtggtgaaagtcaaagacctgggtcag
ccagagtccttacacgcaatcgccctcattcacctgttcattaacgagactgtatccaac
gctacattcattcaagagcagctacgtaagagcttggagactccattggatcgtaacgtg
ggagacagtgaggtcacaccccaagccaacggatacgtgattgttgtcatcgctattata
gctgggactatgacagtcatcttagtcatcttcgtgacggccttggtgcgctgccgtcag
acgcccagacacaaagtggtgcagaagggcaagcagagcggcgagtgggtgtcgcccaac
caggagaaccgtcaaatcaaaaagaaaaagaagaaaaagaagagatctccaaagagcctc
ctcttgaactttgtcagcatagaagaatccaagcctgatgatcccagccaggagcacatt
aatggaaccctggacctgcctgtggagctagatgagcagaccatggggaaatacaactgg
gccactacgccgaccaccttcaaacctgacagcccagacttggccaagcattacaagtct
gcttccccccagccaaccttccaaatcaaaccagagaccccgatggcgcccaataaacac
cacgtgattcaggagctcccgctagacaacacgtttgtggtgggctgtgactcgcactcc
aagtgctcctccaccagctcagacccgtactcggtctcagagtgcagctgtcagggggga
ttcaagactcctgggcaaatccacaccagacaggagacggtactgaaaccaccactctat
gacacactctgtggctcaggtacaactcgctgccacaggataaaaatcaatctctag
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