Salmo salar (Atlantic salmon): 106612363
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Entry
106612363 CDS
T04363
Symbol
brca2
Name
(RefSeq) BRCA2, DNA repair associated
KO
K08775
breast cancer 2 susceptibility protein
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03440
Homologous recombination
sasa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106612363 (brca2)
03460 Fanconi anemia pathway
106612363 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
106612363 (brca2)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106612363 (brca2)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106612363 (brca2)
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
106612363 (brca2)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
106612363 (brca2)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
106612363 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
106612363 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA-2_OB3
BRCA2
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
106612363
NCBI-ProteinID:
XP_014068894
UniProt:
A0A1S3SX29
LinkDB
All DBs
Position
ssa09:complement(93459536..93502355)
Genome browser
AA seq
2848 aa
AA seq
DB search
MFDAFKDQIWEELGPLNPNWFEELTAKASSWDWGDTEKENPSTAISCGQDGSFKTPLGKC
PLDGDMFSTPKIFRQRRPQSPETLTEDALFFPDQGTSATVKMDTSPCLFGKSIDRETPSK
SYRKRLHGDIFGLLDTPKHSTIFLFPQAHSAKRISESLGAQLDPDMSWTSSLNTPVMSPT
IILTKSEERRPMCPVRIATEEQVMFVRKLFPSAKESGSTMLSPEQNDRPLCQHNGLDSHL
PGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEIHSTMAGVLDGDEDVLSIFFSNRSLA
LQRVKTKERIKRKQSGATKEHVPTSTMEHDKVSSERAGEYQHTRETSEALESRTDMKSGD
LATSQWTPINVPDISDYDMDSFHHEGSSFTKHIIPQDGISETFCDFTGSQQPDRGSSKQT
VQVESALSRRTLPCTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVQNPLLSVQDKYVT
QMLPASPGTAPRGENQNIKQSETIPNEAEFNNLNKIALDGKKPQVQQKSATEENIVSQAP
TKDPDLDMSQLCRVFAQDFSQVVDYSQPCSKRADAIKNGFSASACLSAMRLRNRKLLNRL
EWGQKPEHLNSGISDEMHIPGSQFSNSANTSRMKSTVCDSSFPPYTLSDVTQTESSNVHP
SSEKSYGNQSSRGFITGNNWIISLPPEAIKKAKASLDDLIEENMTNVVTAASEVKPVLSC
VTGSRLSTEVKFISPLNVAKRSKQTSVKLNGQVQVQTPQSINVSVSSHPGSGFKMASNKK
IHFFSANLEKVKDLFEIEDEIPAVNIPEISLPEEGNMSCGLELVDGSHLPPLPYTHQRSV
DSQGPLTASQRADVSELCSLLEAADSQLEFTQFKPAKLNFYVPDGSPPRQSEKELDPDFL
TGIDFDDSFNSDVEKQSVKMATTDKNTTISHCKEICQVTTTEIKSSGASSSNSTEKPKEH
VIHRRVLYFPSYSSENIAERSFGLLTKTTNENHLLDMDTNTSGMECESKSLPKLGVGFKT
AGGNAMIVSEKCLSNARALFADLEEKNCAPKCAVKNTEQVETSPVQYRGEVDTNVDSNVT
HFHGPEKKVDLKEPRDEYSDKIKVDFIHSHKHGDGGFHTASGKGVTISAKALQKTNAVFK
DCDAMERSGCAAEKLSKTSVSETGCNNFERNNCGFSTARGKRVDVSATCLLKARTLLNDC
DELEKSKPGKIPSLNAKILSRNIQQKSDCDFKKPSCKAASISAKIPFTAKTPFDGGTSHE
FLGAKRKMLEPENSQTHAKDPLKNGSGFSTASGKRVSVSKRALLKAQALLSECNVDGEEL
SKSKKKISVDLHTIQNPTQKHSGFKTASVKEVTVSPKAHKQAKAVFNNCDSNMDSLISAE
AKHGNIDVKSADGLMNNPGESYCAFITAGGKNVHVSEKGILKAKSILNENLDNCTDSNAI
EEAWFSDGRFSLLTEDGTGVKKGARNKSNSSDLNGDDKSCDFSTASGKSVHMSDGALQKA
KSILNECDVIENPQPENGHKVHLEKIPTKETHEISHGSTASGEGVFISEKALQHVKSVYV
LGETGNVKYSVGSNPVGSRFGFSTASGDGLSVSEKALQEACDDTLDSDTDPHKRSEENRP
LKVPTPHINVQRVPVKAVRLEDCEVIQTIVGMACQSSSVECQAESSLLNFESLGFSGCSV
TQRRYFAQEAMDCTKALLEDEDLTDHCPGTPIQAIPMSCKGGFEMRSGIGKRSAEDLGMT
DQPPLKRRLLTKFDRTVDCSRRSKLTPAKSSSDGIFKDRKVFKYNVALQPNVTRPYRANQ
RCVDTRLNKTEPQKTTSDPTAEDRKPVSSKTAVFVPPFRKNVKLEPQRSSGLQDKTRAPA
VFVSPFRKNNRVTKEGSFKPSEDNHSPFISEMPTKTTSVPLPEYNPITDTGSDNAKESIK
EHDPQNIDRTDVGNDGGHCLPVTLGGEDATAEESIAGQLAPDATGTLLDVVYDAECLQLA
RDMQDMRIRKKKRQTIRPLPGSLYLAKTSGVARLTLREAVGGWHPVQHTHKQLYGYGVHR
HVSDISSESAEAFRFVCRHFFRREAFVEGRIQLADGGWLIPRNDGTAGKHEFHRALCDSP
GVDPKLISEDWVFNHYRWVVWKRACMERAFPALMGSLCLTPEQVLLQLKYRYDLEVDNSK
RSALRKIMERDDTAVKTLVLCVCGVVTKGHNPTRQSWSETKNKTPPESAAGSKAKSSLVG
LIWLTDGWYAIKAQLDVPLTAMLHRGRLAIGGKVLVHGAELVGSQYACSPLEAPDSLMLK
IGANGTRAARWYTRLGFYSNPSPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSDG
GFVFRAGRAEEREARRHGDSKHRAMEILFAKIQAQFEKEEDVCGKPRGRRRTLLGRDIET
LLDGEELYDAVENDPVYLEGRLSEQQQEALNSYRRCVGERRQAALQERFRQALESTQEGG
SCHNRDVTPIWKLSVADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRYRAYQLSTSEGK
KRAGNTSIQLTATKKTQFQNLQASAGWLSERFQAREAVGFRVLLNRDLKPLCGEVDLVGY
VIAITDRQGHSPVVYLVDGWLDFVKVRCCSSLVQQGLEEVVKPLALVALSNLQLRAHPSS
PIHSAIPGLYAGDLVSFSTNPKEPHLQEAAAQLRTLVQGQEHFFRTAEERLCNLVQGSVQ
CLPPPPWTPGWKADAKPNARTTMTPQQSVRSVGPFTPLNRVVHPPPACSSGGDNKDPKSL
KKKRGLDYLCRIPSPPPLCPLGTMTLPLPCVSKNFNTPRRAETHRILKTPLATAPQHVHL
PLQDEWVEDEELVMIDTQALHDDIGIDT
NT seq
8547 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgctttcaaggatcaaatatgggaagagttgggacctctgaacccaaactgg
tttgaggaactcactgctaaagcttccagttgggattggggtgatacagagaaagagaat
cccagcactgcaatatcttgtggacaagatggcagtttcaaaacaccattggggaaatgt
ccccttgatggtgatatgttctctaccccgaagattttcaggcagagaagaccacagtca
cctgagacactgacagaagatgcacttttctttcctgatcaaggaacctctgcaacagta
aaaatggacacaagcccatgcttatttggaaaatcaatagaccgcgagacccccagtaaa
tcctatagaaaaaggctgcatggagacatttttgggctgcttgacacaccgaaacactct
acgatctttttatttccacaggcacactctgccaaacgtatatcagaaagtcttggtgca
cagttagaccctgatatgtcctggaccagttctctcaatacacctgtcatgtcgcccacc
atcattttgactaaaagtgaggagcgtaggcctatgtgcccagtaagaattgctaccgaa
gagcaggttatgtttgtgcgaaagcttttcccctcggccaaggagtctggaagcacaatg
ctgtcaccagaacagaatgatagacctctctgtcaacacaatggactggattcccacttg
cctggtgtgattgacatctcccctggctttcaagacacgttacctggtgacagtggcagc
cattggaaacagactttaccagatgctattgaggacggagaaatccacagcacaatggcc
ggtgttctagatggagatgaggatgtcctctccatattcttcagcaacagaagtttggct
ttacaaagggtgaagaccaaggagagaatcaaaaggaagcaaagtggcgcaactaaggaa
cacgtacctacttctacaatggaacatgacaaagtatccagtgagagagcaggagaatac
caacacaccagggaaacctctgaggctcttgagtccaggactgacatgaagtctggggat
ttggcgacttctcagtggactccaataaatgtacctgacatttcagactatgatatggat
tcatttcaccatgaggggtcttcctttactaaacacataattccacaagatggcataagt
gaaacattctgtgacttcactggaagccagcagccagatcgtggctcctctaagcagact
gtccaggtggagtcagccctttctagaagaacattaccatgcaccagccagccagaggga
tctcaattgacagggtctgtagtcgaaagctctctagaacacacctttcccaggaaaaca
aggacatttgtttactgtgtccaaaatccacttctgtcagtgcaagataaatatgttact
cagatgttacctgcatcacctggaactgctcccaggggtgaaaatcagaacataaaacaa
agtgaaaccataccaaatgaagctgagtttaataatcttaacaaaattgccttggatggg
aaaaagccgcaagttcagcagaaaagtgcaactgaagaaaatattgtttcacaagcacca
accaaagaccctgatcttgatatgtcacagctttgcagggtatttgcgcaagattttagc
caagtagttgactacagtcaaccatgcagcaaaagagcagatgctattaaaaatggcttc
tctgcatcagcttgtctctcagcaatgagactaaggaacagaaaactgttgaatagacta
gaatggggccagaaacctgaacatcttaactctggcatcagtgatgaaatgcatattcct
ggttctcagtttagcaactctgcaaacacgtctagaatgaagagtacagtgtgtgatagc
agcttccccccttacaccctttctgatgtcacacaaacagaatcatccaacgttcaccct
agctctgaaaaaagttatggaaatcaatcatctagagggtttataacaggtaacaactgg
attatctctttgcctccagaagcaataaagaaagcaaaagcatcattagatgacttaatt
gaggaaaatatgactaatgttgttactgctgccagtgaagtgaaacctgtgttgtcgtgt
gtgacaggaagccgactgtccacagaagtgaagttcattagtccactcaacgttgccaaa
aggtcaaagcaaaccagcgtaaaattgaatggtcaagttcaggttcagacccctcagagc
atcaatgtttcggtttcctcacaccctgggtctggtttcaaaatggcctccaataagaag
atacattttttttcagcaaatctggagaaagtcaaggatctgtttgagattgaggatgaa
atacctgcagtcaatattcctgagataagccttcctgaggaaggtaatatgtcatgtgga
ttggagcttgttgatggatctcatttaccacctctaccctatacacaccagaggtctgtt
gatagccaaggtccgttgacagcctcacagagagctgatgtttcagaattgtgcagtctc
ttagaagctgcagacagccaattggaattcacacagtttaaaccagcaaagctgaacttc
tatgttccagatggtagcccccctcgtcaatctgagaaagaattggatcccgactttctc
acaggcatagatttcgatgacagtttcaactctgatgttgagaagcaatctgtgaagatg
gccaccactgacaaaaatacaactatttctcattgcaaggaaatttgccaagtaacaacc
accgaaattaaatctagtggggcatcatccagcaattcaacagagaaacccaaagaacat
gttatccacagaagagtactttactttcccagttatagctctgaaaacatagctgagcgc
tcctttggtttgttgacaaaaaccacaaacgagaaccatctgctcgatatggatacgaac
accagtggaatggagtgtgaaagcaaaagtctccccaagttgggtgtgggttttaaaact
gctggcggaaatgctatgatagtttcagagaagtgtctgagcaatgcaagggccttgttt
gcagatttagaggaaaaaaactgtgcacccaagtgtgcagtaaaaaatacggaacaagtt
gaaacctcacctgttcaatatagaggcgaagttgatacaaatgttgattcgaatgtgaca
cattttcatggccctgaaaaaaaagtagatctgaaggaaccacgtgatgaatacagtgac
aagattaaagtggactttatacattctcacaaacatggggatggtggtttccacacagcc
agtggtaaaggagtgaccatctcggcaaaggcccttcaaaaaacaaatgcagttttcaaa
gactgtgacgctatggaaaggtcaggttgtgcagcagaaaagctgagcaaaacaagtgta
tcagagactggctgtaataattttgagagaaacaattgtggctttagcactgctcgaggt
aagagagttgatgtttctgcaacatgtctactgaaggcaaggactctcctgaatgactgt
gatgaattggaaaaatctaagccagggaaaatccctagcttgaatgcaaagatactaagt
cggaatattcagcagaaaagtgactgtgattttaagaaacccagttgtaaagcagcctcc
atatcagcaaagatcccttttacagcaaaaactccatttgatggtggcacgtcacatgaa
tttctaggggcaaagaggaaaatgcttgaaccagaaaattctcaaacccatgctaaagat
cctttgaaaaatggatctgggttcagcactgccagtggtaagagagtgtctgtgtccaaa
agggcgctgttgaaagcacaggctcttttgagtgaatgtaatgtagatggagaggaactt
tctaaatcaaagaaaaagatcagcgtagatcttcataccattcaaaatcctacacagaag
cacagtggatttaagactgctagtgtcaaagaagttaccgtatcacctaaggcccataag
caagcaaaggctgttttcaacaactgtgattccaatatggacagcttaatcagtgctgaa
gcaaagcacgggaatatagacgtaaagtctgctgatggtctgatgaacaatccaggggaa
agctattgtgccttcatcacagctggtggaaagaatgtgcatgtatctgaaaaaggtatt
ttgaaggcgaagagcattctgaatgaaaaccttgataactgcacagactcaaatgccatt
gaggaggcttggttttcagatggtagattttcattactcactgaagatggtacaggtgtc
aaaaaaggagctaggaacaaatcaaattcttctgacctcaacggtgatgacaagagctgt
gatttcagcactgccagtggcaagtctgtgcatatgtccgatggagcactccagaaagca
aagtctattctgaacgaatgtgatgtaattgaaaatccacaacctgagaatggccacaaa
gtgcatctggaaaagattccaacaaaggaaacgcatgaaatctctcatggtagcacagcc
agtggggaaggggtgtttatttcagaaaaggctcttcaacatgtgaagtctgtgtacgtt
ctgggtgagactggtaatgtaaaatattcagttggcagtaatccagtaggaagccgtttt
ggttttagcacagccagtggtgacggactgtctgtttcagagaaggcacttcaagaagcg
tgtgatgatacccttgacagtgatactgaccctcacaaaagatctgaagaaaataggcca
ctgaaggtccctactccccatattaatgttcagcgtgtgccggtcaaagcagttcgactg
gaggactgcgaagtgatccagaccattgttggaatggcatgtcagtcttcatctgtagaa
tgtcaagcggagtcttccttgttaaattttgaatcccttggattcagtggctgctctgtg
acccagaggaggtactttgcccaggaggccatggattgtaccaaggctcttttagaggac
gaagacttgaccgatcattgtcctggaacaccaatccaagctatccccatgtcctgcaag
gggggttttgagatgagaagtggaattgggaaaaggtcggcagaggatttagggatgaca
gaccagcctcctctgaaaagaagactcttgaccaaattcgacagaactgtggattgtagt
agacggtcaaaactcactccagctaaaagcagttcagatggtatatttaaagacaggaaa
gtcttcaaatataatgtggctcttcaacctaatgtcaccaggccatatcgcgctaatcag
agatgtgtagacacaaggctgaataagaccgagccacagaagacaacgtcagatccaacc
gccgaagaccgtaaaccagttagctccaagacagctgtatttgtccccccattccggaag
aatgtcaagcttgagccacagaggagcagtggtcttcaggacaagactagagcgcctgct
gtgtttgtttccccgtttcgaaaaaacaaccgcgtaaccaaggagggttcctttaagcct
tcagaagataatcattctcccttcatctctgaaatgcctaccaagaccacatctgttcca
cttcctgagtacaaccccatcactgacactggtagtgataacgcaaaggagtccattaag
gaacatgacccacaaaatattgacagaacggacgtaggcaatgatggtggccattgcctt
cctgtcaccctaggaggagaggatgccactgcagaggagtctattgcaggtcagctagcc
cctgacgccaccggtacccttctagatgttgtttatgatgcagagtgcttgcagctggcc
cgagacatgcaggacatgaggatcaggaagaagaagcggcagaccattagacctctccct
ggtagcctgtacctggccaagacatctggggtggccaggctgaccctcagggaggctgtt
ggaggttggcaccctgtacaacacacacacaaacagctgtatggctacggagtgcaccgg
catgtttcggatatcagcagtgagagtgccgaggcgttccgctttgtctgccgacacttc
ttcagacgcgaggcgtttgtagaggggcgcattcagctggccgacggggggtggctcatc
cctcgcaatgatggaactgcagggaaacatgagttccacagagcgttgtgtgacagccct
ggcgtggaccccaagctgatcagtgaggactgggtgttcaaccactaccgctgggtggtg
tggaaacgggcctgcatggagagggcattcccagcgctgatgggcagcctctgtctcaca
ccagaacaggtgctcctacaactgaaatacaggtacgacttggaggtggacaacagcaag
aggtcagctctaaggaagatcatggagagagacgacacggcagtcaagaccctggtgctt
tgtgtatgtggtgttgtcaccaaaggccataatccaacaaggcagagctggagtgagacc
aagaacaaaaccccacccgagagcgccgcagggtctaaagcgaagtcgtcccttgtaggc
ttgatctggctgacggatggctggtacgccatcaaggcccagctggacgtaccactgacc
gccatgctccaccggggccgcctggcgattggggggaaggtgctggtccacggggccgag
ctggtgggatctcagtatgcctgctccccgctagaggctcccgactccctcatgctgaag
attggggccaacggcaccagagcggcgcgttggtacaccaggctagggttctacagcaac
cctagtccgttcctcctccccctctcctccctctacagcaacggaggccccgtgggctgt
gtggacattgtggtgctgaggagctaccctacccagtggatggagaagaagtcggacgga
gggtttgtgttccgcgcaggccgtgcagaggagagggaggcgcggcgtcatggcgactcc
aaacacagagccatggagatcctgttcgccaagatccaggcccagtttgagaaggaggag
gacgtttgcggtaaacccagaggccggagacggaccctgcttggtcgagacattgagacg
ctgctggacggggaggagctgtacgacgcagtggagaatgacccagtatatctggagggc
cgtctgagtgagcagcaacaggaggcgttgaacagctacaggcgttgtgttggtgagagg
aggcaagcggcactgcaggagcggttccgccaggctctggaaagcacccaggagggcggg
agctgtcacaaccgagacgtgacccccatctggaagctcagcgttgctgactccagggcc
aagccgggcagcaatgcagtgtacctgttgaatatctggcgcccctccatggatctgcag
tccttgctgaaggagggctgtcgatacagggcctaccaactatccacgtcggagggcaag
aaacgagccggtaacacctccattcagctcaccgccaccaagaaaacccagttccagaat
ttacaggcttctgcagggtggttgtctgagcgtttccaagcccgagaggcggtcggtttt
cgcgttctcctgaaccgggacttaaagccgctctgtggagaggtggatctggtgggctac
gtcatcgccatcacagacagacaaggtcactctccagtggtgtatctagtggatggctgg
ctggactttgtcaaggtccgctgctgcagcagtctggtccagcagggcttggaggaggtg
gtcaagcctctggctctggtggccctcagtaaccttcagctcagagcccatccctcctcc
cccatccacagcgccatccctggcctatacgctggagatctggtctcgttttccaccaac
cctaaggagccacatctacaggaggctgccgctcaactcaggacccttgtccagggccag
gaacacttcttcaggactgcagaggagaggttatgtaacttagtccaggggtctgtccag
tgtcttcctccgccgccatggactccaggctggaaagcagatgccaaaccaaatgcaagg
actactatgacaccccagcagtcagttcgaagcgttggccccttcacccccctgaacagg
gtcgtccaccctccacccgcctgctcctcagggggggacaacaaagaccccaagagcctg
aaaaaaaagaggggcctggactacctgtgtcgcatcccctctccccctccactctgcccc
ttgggcaccatgaccttacccttgccgtgcgtcagcaagaacttcaacacccctcgcagg
gccgagacccaccggatcctaaagacacctctggccaccgctccacagcatgtccacctg
cccctacaggatgagtgggtggaggatgaagagctggtcatgattgacactcaggcccta
cacgatgacatagggatagacacgtga
DBGET
integrated database retrieval system
