Salmo salar (Atlantic salmon): 106612439
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Entry
106612439 CDS
T04363
Symbol
HMGB1
Name
(RefSeq) high mobility group-T protein-like
KO
K10802
high mobility group protein B1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03410
Base excision repair
sasa04140
Autophagy - animal
sasa04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
106612439 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106612439 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
106612439 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sasa03036
]
106612439 (HMGB1)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106612439 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106612439 (HMGB1)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
106612439 (HMGB1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
106612439 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
106612439 (HMGB1)
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
106612439 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
106612439
NCBI-ProteinID:
XP_014069035
UniProt:
A0A1S3SXH2
LinkDB
All DBs
Position
ssa09:complement(96165963..96169811)
Genome browser
AA seq
203 aa
AA seq
DB search
MQPRQVTMGKDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSP
KEKGKFEDMAKQDKVRYEREMKNYIPPNGQKKKRFKDPNAPKRPPSAFFIFCADFRAKIK
SEHPGLSIGDTAKKLGVMWNSSAAEEKKPYEKKAATLKEKYDKDIASYRTNGRVDTASSA
AADDDDDEEDEEDDDDDDEDDDE
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctagacaagtcaccatggggaaagatcctaggaagccgagaggcaagatgtcc
tcatatgcgtacttcgtgcagacctgcagggcggagcacaagaagaaacaccccgaagcc
agtgtcaacttcgccgagttctccaagaaatgctcagagcgatggaagcccatgtctcct
aaagaaaaaggaaagtttgaagacatggcaaagcaagacaaggtccgctacgagagagaa
atgaagaactacatcccacccaatggccagaaaaagaagaggtttaaggatcccaatgcc
cccaagagaccaccgtctgcgttcttcatcttctgtgctgacttccgggccaagataaag
agtgagcacccaggcctgtccatcggtgacactgctaagaagctgggagtgatgtggaac
agctctgcagctgaggagaagaagccatacgagaagaaggcagccacgctgaaggagaaa
tacgacaaggatattgcatcataccgcaccaatggtagagtggatactgcctcctctgca
gctgctgatgatgatgacgacgaagaggatgaggaggatgatgacgacgacgatgaggat
gatgacgaatag
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integrated database retrieval system
