Salmo salar (Atlantic salmon): 106612469
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Entry
106612469 CDS
T04363
Name
(RefSeq) nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sasa03009
]
106612469
03036 Chromosome and associated proteins [BR:
sasa03036
]
106612469
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106612469
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
Pre-60S particles
Helicases
106612469
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
106612469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
Gly_acyl_tr_C
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106612469
NCBI-ProteinID:
XP_014069106
UniProt:
A0A1S3SXN9
LinkDB
All DBs
Position
ssa01:94041302..94061098
Genome browser
AA seq
745 aa
AA seq
DB search
MPSKIIFETEDIGMEGELDISAGSTTPKKVKEKKTKKGKKIKKHKTVVEEEPDCEPPVPK
KKKEKVDKANGDVNKSIDVNGNIESPLKNNTSYSNEESTDNDKATERKKTSEEVVNRVLP
KTPKLIAQTNGHSTTTTPAQSSEDSGSDGEKEIETPEQKEGAFSNFRISPNTIKLLQARG
ISFLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEKIQNDPDDKRRGRAPKVLC
LAPTRELAIQVAKDFKDMTKKLSVTCFYGGSSYNPQLDAIRSGIDVLVGTPGRIKDHLQN
NKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSESNPQTLLFSATCPPWVYVV
AKKYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYSGSHGRTIVFC
ETKKDANELSMNTSIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATNVAARGLDIPE
VDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAGITFKRVGV
PTANDIIKSSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGAVDALAAALAHISGATALE
QRSLLNSDAGYTTMTMNCSQELHNIGCAWRGLKEQLGEEIDNVIRGMTFLKGKMGVCFDV
PADKVKEYQDAWQDGRRWQLSIATELPELEEKQRMGGDRGYGRSFGGRGGGGRGGGRGFR
NGSGGGNWRGGGGSHKRSFSSAFDY
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaagattatttttgaaaccgaagacatcgggatggaaggtgaactggacatt
agtgcgggcagtacgacacccaaaaaagtaaaggagaagaagaccaagaagggaaagaaa
atcaagaaacataaaacagttgttgaagaggaacctgactgtgaacctcctgttcccaag
aagaagaaagaaaaagtggacaaagcaaatggggatgtgaacaaatccattgatgttaat
ggaaatattgaatcacctttgaagaacaacacatcttattccaatgaggagtctacagac
aatgacaaagcaactgagagaaagaagacgtcagaagaagttgtcaacagagtgttgcct
aagactcccaagctgatcgcacaaactaatggacattccacgacgacaactccagcacaa
tctagcgaagactccggcagtgacggggaaaaagaaatcgagacaccagaacaaaaagag
ggagccttttcaaacttcagaatctcccccaacaccatcaaactacttcaagcacgaggc
atatctttcctctttgacatccaaacccaaaccttcaattcagtgtatgagggaaaggat
gtaattggtcaggcaagaacaggtactggcaaaacattagcttttgccattccgctgatc
gagaaaatccaaaatgacccggatgacaagaggcggggcagagccccaaaggttctgtgc
cttgctccaacgagagaattggctattcaagtagccaaggatttcaaggacatgacaaag
aaactgtctgttacctgtttctatggtggaagctcctacaaccctcaacttgatgcaatc
cgcagtggcatcgatgtcctagtgggaactccaggtcgtatcaaggaccatctacagaat
aacaaactggacctgtctcaattgaagcacgttgtattagatgaagtggaccaaatgctt
gatatgggctttgcagaacaggtggaggagatactttctgcatcttaccaaaaagactct
gagagcaatccccagaccctgctcttctctgccacatgcccaccatgggtgtatgttgtg
gcaaagaagtacatgaggccaacctatgagcatgtggacctcattggcaaaaagacccag
aaagctgccaccacagtagagcaccttgccattgcgtgtcactggtctcagagggctgca
gtcattggggatgtggtccaggtgtacagtggcagccacggccgcaccatcgtcttctgt
gagaccaagaaggatgccaacgagctgtcaatgaacacctccataaaacagagttcccag
tcacttcatggggacattcctcagaagcagagggagatcacattgaaaggcttcagaagt
ggcacctttgaggtcttggtggccaccaacgttgctgctcgtgggttggacatcccagag
gtagacctggtcgtgcagtgctcacccccaaaggatgtggagtcatacattcaccggtca
ggtcgcactggtagggctggcaggacaggcgtctgcatctgtttctaccaacgcaaagag
gaagaccagctccgatacgtagagcagaaagcaggaatcacatttaagagagttggagtg
cccactgccaatgacatcatcaaatcctccagtaaagacgcagtgaggtttttagactct
gtgcctccccaagccattgagtacttccgtgtgtctgctaccaagctgattgaggagcgt
ggggccgtggatgccctggctgccgccctggcacacatatcaggtgctactgccctggag
cagaggtccctcctcaactctgacgctggctacaccacaatgacaatgaactgctcccag
gagctgcacaacattggctgcgcttggcgtggtctaaaggagcagctgggagaggagatt
gacaatgtgatccgggggatgaccttcctcaagggcaaaatgggagtctgttttgatgtt
ccagctgacaaagtaaaggagtaccaagatgcatggcaggatggtaggcgttggcagctg
tcaatcgccacagagctccctgagctggaggagaaacagcgcatgggtggtgaccgtgga
tacggacgctccttcggtggacgtggtggtggaggacgggggggtggccgtggcttcaga
aacggcagcggtggtggcaactggagaggaggtggaggaagtcataaacgcagcttcagc
agtgcatttgattattaa
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