Salmo salar (Atlantic salmon): 106612584
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Entry
106612584 CDS
T04363
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106612584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
106612584
Enzymes [BR:
sasa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
106612584
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
HECT type E3
106612584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
106612584
NCBI-ProteinID:
XP_014069349
UniProt:
A0A1S3SYD6
LinkDB
All DBs
Position
ssa09:106543007..106595350
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AA seq
2062 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKHKTNSPPESRRPKSKASKAA
PSSASGQSRGHSSRSSLSLSVASFVLQDDPEAAGTSEREPTGHQSKSEGTTRGLKRSSAP
DLTNIYTPTPAKKSKSHPPPRDHTTEAKKGPAKSSKKRPLAPELPAPTGRGQSSKCGASG
ASPTQKRKKADSLPGLSSTAGSLPNRTDGRSAKPTKLASKSAASAKAGCSTVTDSSSSAS
TSSSSSTGANSATATQGARLKQGKDQNKARRSRSASSPSPRRSTRDREQAKAAVSSKFEW
ASRFSPKVNLPKPKLSLPGSSKTESTSKPGPSGLQAKLASLRKSTKKRSESPPAELPSFR
RSTRQKTTGSCASTSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARNDEAPQGAS
ASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGA
SSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN
FDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHS
KAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLTQRLTHQ
DKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTPPVLSSGMFIMVVRM
FSLMCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELTSLICEL
MPCLPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEI
SLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGHQEVRREDARAQLMKED
PELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNHAVSSHI
ASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLTSPPKAC
TSGTASLCTTTISTATTTAASNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKR
GPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNSEPSRTA
GVSGLARAPPKDSVSNNRDKIKAWIKEQACKFVARYFNTEKIDGSNPALNVLQRLCTATE
QLSLQVLYSTIVSCVVVSWRIVSESDVSSFEIQAISGPVKQLLLYLTSSSDRDLVSRDVR
LKRFLHVFYGCPIPGMELAGRLEPSENGPLLSLVHKMNNCLSQMEQFPVKVHDFPSGNGN
GSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRI
REEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFSLQS
EEERESTDDEANPLGRAGIWTKTHTIWYKPVRDDEDGTKDAVGGKRGRAQTAPTKTSPRN
AKKQDELWHDGVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFYLYD
NAVSKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQML
FYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQDLG
SSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGTKYM
FSSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHE
TSISSHDLVNIDPGVAKSIQHLEDIIRQKKRLEHDLSQTRETLQQALESLNMNGCSVEDL
GLDFTLPGFPNIELKKGGKDVPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFESVFP
LHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFDVLSSFDAEQ
QRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSS
IEIMRKKLLIAAREGQQSFHLS
NT seq
6189 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccatacagtcgcgggaaggttgcagtcagagcaggtaaaa
cataaaacaaattcccctcctgaaagtagaagacctaaatctaaggcttccaaagccgca
cccagctcagcctctggccagtccagggggcacagctcaagaagcagtctgtcactgtct
gtggcttcatttgtgctgcaagacgacccagaggccgcagggacatcagagcgagagcca
acaggccaccaatccaagagtgaaggcaccacccgagggttgaagagaagttctgcacct
gacctcaccaacatctacacccccaccccagccaagaagtccaaatcccaccctccaccc
agagaccataccactgaggccaagaaaggccctgccaagtcctccaagaagagacccctg
gctccagagttgcctgcgcccacaggccgcggccagagcagcaagtgcggggcctctggg
gcctcaccgacccagaaacggaagaaggctgactccctccccggtctgagcagcactgct
gggtccctccccaaccgtaccgacggcagatctgcaaaacccaccaagctggcgtcgaaa
tcggccgcctcagccaaagctgggtgtagcaccgtgactgactcctcctcttctgcctcc
acctcttcctcctcctccaccggcgccaacagtgccaccgccacgcagggcgccaggctc
aagcagggcaaagaccagaacaaggcacgtcgctcccgctccgcctccagcccttcccca
cgccgaagcacccgcgacagggagcaggccaaagccgcagtctcgtccaagtttgagtgg
gcctcccgcttcagtcccaaagtcaacctgccaaagcccaaactgtccctacctggctcc
tccaagaccgagagcacctccaaacctgggccctcaggactacaagccaaactagcaagt
ttgaggaagtccactaagaagcgcagcgagtctcctccagcagagctccccagctttcgg
cggagcacacgtcagaagaccacgggctcctgcgccagcaccagtcggcgaggctcaggc
ctgggcaagcgcggggcagccgacgctcgccgacaagagaagatggccgactcggacaac
aaccaggacggggccaactcctcggccgcccgcaatgacgaggccccgcagggggcttca
gcttctagttcagtggccggcgctgtagggatgaccacatccggtgagagtgagtccgat
gactctgaaatgggcagactccaagccctgttggaggccaggggtctacccccacacctc
tttgggcccctgggaccccgtatgtcccagctgtttcacagaaccataggcagtggagcc
agctccaaggctcagcagctgctgcagggcctgcaggccaccggtgacgagtcccagcag
ctccaggccgccatcgagatgtgccagctactggtgatgggcaacgaggagacgctagga
ggcttccctgtgaagagcgtggtgcccgcgctgatcacgttgttgcagatggagcataat
tttgacattatgaaccacgcctcccgtgctctcacttacatgatggaggcgctgcctcgg
tcctctgctgtggtcgtggacgccatccccgtcttcctggaaaagcttcaggtgatccaa
ttcattgatgtggcggagcaggccctgacagccttggagatgttgtcaaggcgtcacagc
aaagccatcctgcaggctggtggcctcgctgactgtctgctgtacctggagttctttagc
atcaacgcccagaggaacgccctggccattgccgccaactgctgccagagcatcacccct
gacgagttccactttgtctctgactctctgccactgctgacccagagactcacacaccag
gataagaaatctgtcgaaagcacttgtctctgttttgccagactggtggataactttcaa
cacgaggagaaccttctgcagcaggtggcctcgcgggatctgctgaccaacatccagcag
ctgctggtggtcaccccgcctgtgctcagctcgggcatgttcatcatggtggtgcgcatg
ttctccctcatgtgctccaactgcccctgtctggccgtgcagctcatgaagcagaatatt
gcagagactctgcgcttccttctgtgcggcgcggccaacggtagctgccaggagcagatt
gacctggtgccccggagcccacaggagctctatgaacttacctcactcatctgcgagcta
atgccctgccttcctagagagggcatctttgctgtggacctcatgctgaagaagggcagt
gcccaggccacagagggtgccatctggcagtggagggacgaccggggcctgtggcacccc
tacaaccgcatcgacagtcgcatcattgagacggcccaccagaacggagaggacgagatc
agcctgtccaccctgggccgcgtctacacaatcgacttcaactctatgcagcagatcaac
gaggacactggcacagcacggggtatccagaggaaacccaaccccttagccaaccccact
actgggggtcaccaggaggtgaggcgggaggatgcacgggcccagctgatgaaggaggac
cctgagctggccaagtgcttcatcaagaccctgttcggggtgctgtacgaggtgtacagc
tcgtcggccggcccagccgtcagacataagtgcctccgagccatcctcaggatcatcttc
ttcgccgatgccgagctcctcaaggacgtgctgaggaaccacgctgtgtccagtcacatt
gcctccatgctgtccagccaagacctgaagattgtagttggctctctgcagatggctgag
atcctcatgcagaagctgcccgacgtattcagtgtcttcttcagaagagaaggtgtgatg
caccaggtgaagaacctggctgagtcagaggccttcctcaccagtcccccaaaggcgtgt
accagcggcacagctagcttgtgtaccaccaccatcagcactgcgaccactacggcggcc
tccaacgccaccccagacctgggctcgcctagcttccagcacagcatggacgactcacta
gacctcagtccacaggggcgattaagtgatgtgctgaagagaaaacgtctgcctaagaga
gggcccagaaggcccaagtactctcctcccagggacgacgacaaagtagacaatcaggcc
aagagtcctaccactactcagtcccccaaatcctccttcttggccagtctgaaccccaag
acctggggcaagctgggtgcccagaccaacagcaccaactctgagccctctcgcacggcc
ggggtgagcggcctggcacgcgcccctcccaaggactcagtctccaacaacagggacaag
atcaaggcttggattaaagaacaggcctgtaagtttgtggcccgctacttcaacactgaa
aaaattgatggcagcaaccccgcactgaatgtactccagagactctgcaccgccacggaa
cagctcagcctgcaggtactgtactccacaatagtctcctgtgttgtagtatcttggcgc
atcgtgtcagagtcggatgtgtcgtcgttcgagatccaggccataagcggtcctgtcaag
cagctgctgctctacctgacctccagcagtgaccgtgacctggtcagccgtgacgtccgc
ctcaagaggttcctgcacgtcttctacggctgcccgatcccggggatggagctggcaggc
cgcctggagccgtctgagaatgggcccctgctgtcactggtgcacaagatgaacaactgc
ctaagccagatggagcagttccctgtcaaggtgcacgacttccccagtggcaacggcaac
gggagcagagggtctcaggccctgaagttcttcaacacacaccaactcaagtgtcagctg
cagaggcacccggactgtaccaatgtgaagcagtggaaggggggcccggtgaagattgat
cccctggccttggtacaggccattgaacgttacctggtcgtccgaggttacggacgaatc
agagaggaggatgaggacagtgacgatgatggttcagacgatgaaattgacgaatctctg
gcggcccagttcctgaactctggcagcgtgcgccaccggctacaattctacatcggcgac
caccttctaccctacaacatgacggtgtaccaggcagtgcggcaattcagcctgcagtcc
gaggaggagagagagtccacggacgacgaggccaacccgctcgggcgggctggcatctgg
accaaaacccacaccatatggtataagccagtgagggacgatgaggatggtactaaggat
gcggtgggagggaagaggggccgggcacagaccgcccccaccaagacctcgcctcgcaac
gctaagaaacaggacgagctgtggcacgacggcgtgtgtcccagcgtggccagccccttg
gagatgtacctcatgtcggagcccccggagagcatcaccttcgacgacccgtctctggac
gtcaacctgctgctgagggtgctgcactccattagtagttactggttctacctgtacgac
aatgctgtgtctaaggagatcatccccaccagtgagttcatcaacagtaagctaactgcc
aaggccaatcgacagctgcaggaccctctggtcatcatgaccggcaacatccccacctgg
ctcacagagctcggcaagacctgtcccttcttcttcccgttcgacacacggcagatgctc
ttctatgtaacagcgtttgaccgggaccgggccatgcagcgcctcctcgacaccaacccc
gagatcaaccaatcagattctcaggacagccgtgtggcgccccgcctcgacaggaaaaag
cgaacgataaaccgtgaggagctgctgaagcaggcggagtcggtgatgcaggacctcggc
agctccagagccatgctggagatccagtatgagaacgaggtgggcacagggctgggtccc
accctggagttctacgccctggtctcccaggagctgcagagggctgacctcgggctgtgg
aggggtgaggaggtcaccctgtccaaccccaaaggaagccaagaagggaccaagtacatg
ttcagctcccgagggctgtttgccgttcccttcggcaggacaaccaaaccggcgcacatc
gccaaaatcaagatgaagttccgcttcctgggcaagctgatggccaaggccataatggac
ttcagactgctggacctgcccctggggctgcccttctacaagtggatgctgcgacacgag
acgtccatcagctcccacgacctggtcaacatcgacccgggagtggccaagtccatccag
cacctggaggatatcatccgccagaagaagaggctggagcacgacctctcccagacgagg
gagaccctgcagcaggctctggagagtctcaacatgaacggctgctctgtggaggacctg
ggcctggacttcaccctgcctggtttccccaacattgagctgaagaaggggggcaaggac
gtccctgtcaccatctacaacctggaggagtacctcaggctggtggtctactggacgatg
aacgaaggcgtgtcccggcagtttgagtctttcagggaagggtttgagtcggtcttcccc
ctgcatcacttgcagtatttctaccctgaagagttggatcagctgctttgtggcagcaag
tccgagacctgggacgtcaagaccctgatggagtgctgtcgtcccgaccacggctacacg
catgacagtcgtgctgttaggttcctgtttgatgtgctcagcagttttgatgcagagcag
cagagactcttcctgcagtttgtcacaggaagccccagactgcctgttggaggtttccgt
agtctgaacccaccgctgaccattgtgcggaagacttttgagtcaacggagaacccggac
gacttcctgccctcggttatgacctgcgtcaactacctgaagctgcccgactactccagc
atcgagatcatgcgcaagaaactgttgattgcagcccgagagggccagcagtccttccac
ctgtcctga
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integrated database retrieval system
