Salmo salar (Atlantic salmon): 106612840
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Entry
106612840 CDS
T04363
Symbol
vps53
Name
(RefSeq) VPS53, GARP complex subunit
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106612840 (vps53)
Membrane trafficking [BR:
sasa04131
]
Protein recycling
Others
EARP complex
106612840 (vps53)
Endosome - Golgi transport
Tethering complex
GARP complex
106612840 (vps53)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
Syndetin_C
hAT-like_RNase-H
FBF1
PsaD
VPS51_Exo84_N
COG4_N
NBD94
Sec8_N
Motif
Other DBs
NCBI-GeneID:
106612840
NCBI-ProteinID:
XP_014069888
UniProt:
A0A1S3SZW0
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All DBs
Position
ssa09:complement(112048942..112085416)
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AA seq
831 aa
AA seq
DB search
MMMEEEELEFAEDLEAILHLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLA
NIDDVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALAEAQVAIGQLFGKIIDIKDKAE
KSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKRQYGEVANLLQ
GVVNVLEHFHKYMGIPQIRQLSERVKAAQSELGTQILADFEEAFPAQGSKRAGGPSNVLR
DACLVANVLDPRIKQEIIKKFIRQHLSEYMVLFQENQDVAWLDKIDRRYAWIKRQLVDYE
EKYGRMFPEEWCMTERIAVEFCHITRTELAKVMRTRAKEIEVKLLLFAIQRTTNFEGLLA
KRFSGCTLTDGPGVKKPEPPLESTNPFLEDEVGDDGSEMEEDLDRPKKHKAPDNPFHGII
SKCFEPHLYVYIESQDKNLGEMIDRFVSDFRAQGPPRVGTEDGGAVLPSCADLFVYYKKC
MVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTSSNSGGLTIKSLLQEKEGSEA
AKFNVEELCLICSILSTAEYCLATTQQLEEKLKEKVDKTLVERINLTGEMDTFSNVISNS
IQLLVQDLDAACDPALTAMSKMPWQSVEHVGDQSPYVTSVIMHIKQNVPIIRENLASTRK
YFTQFCIKFTNSFIPKFINHLFRCKPISMVGAEQLLLDTHSLKTVLLDLPSIGSQVVRKA
PASYTKIVVKGMTRAEMILKVVMAPHEPTVVFVDNYIKLLADGNPETFQKTLDMKGLKRS
EQSSMLELFRQRLPAPPSGADGGPSLSFSTPTPEQENSRIRKLEKLIKKRL
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggaggaggaagaattggaatttgcggaggatttagaggctattttgcacctt
actccagaggtgcagttggccatcgagcaggttttccccagtcaagacccattggacaga
gcagattttaatgcagtggaatacatcaatacattgtttcccactgagcagtcactggca
aatatagatgatgtggtcaacaagatccgtctgaagattcggcgtctggatgacaacatc
aggacggtggtgagaggccagaccaacgtgggccaggatggcagacaggcactggcagag
gcccaggtagccatcggccagctctttggcaaaatcatcgacattaaggacaaggctgag
aaatctgagcaaatggtcaaagagataacgcgggacatcaaacagctggaccatgctaag
cgtcacctgaccacctccatcaccaccctcaaccacctgcacatgctggccgggggcgtg
gactctctagaggccatgacgaggaagaggcagtatggcgaggtggctaacctgctacag
ggggtggtcaacgtgctggaacacttccacaaatacatgggcatccctcagatcagacag
ctctcagagagggtgaaagcggcccaaagcgagctggggactcagatcctggcagacttc
gaagaggccttccccgctcaggggtcaaagagagcagggggacccagtaacgttctgagg
gatgcctgtctggtggccaacgtcttggaccctcgcatcaaacaggagatcatcaagaag
ttcatcagacagcacctctctgagtacatggtgctcttccaggagaaccaggatgtagct
tggctggataagatcgaccggcgctacgcctggattaagcgtcagctggtggactatgag
gagaagtacggacgcatgtttcctgaagagtggtgtatgaccgaacgcatcgctgtggag
ttctgccacatcaccaggacagagctggccaaagtaatgcggacgcgggccaaagagatt
gaggtcaagctgcttctgtttgccattcagaggaccaccaactttgaggggctgctcgcc
aagcgcttctctggatgcaccctcaccgacgggcccggggtgaagaagcctgagccacca
ctggagtccaccaaccctttcctggaggacgaggttggagatgatggttcagagatggag
gaggatctggataggcccaagaagcacaaggctcctgacaaccccttccatggcatcatt
tccaagtgctttgagcctcacctctatgtctacatcgagtctcaggacaagaacctgggg
gagatgattgaccgttttgtgtcagacttccgggcgcagggcccccccagggtgggcacg
gaggacggtggagcggtgctgcccagctgtgctgacctgtttgtctactataagaagtgc
atggtgcagtgctcccagctcagcacaggggaacctatgattgccctcaccaccatcttc
cagaagtacctcagagagtatgcctggaagatactgtctggaaacctgcccaagactagc
agtaacagtggaggactgaccatcaagagtctactgcaggagaaggagggttcggaggct
gctaagttcaatgtagaggagctgtgtctcatctgtagcatcctcagtactgcagagtac
tgtctggccaccacacagcagttggaggagaagctgaaggagaaggttgataagaccctg
gtggagagaatcaacctgactggagagatggacaccttcagcaatgtgatttccaacagt
atccagttgcttgttcaggacctggacgctgcctgtgaccctgctctcactgccatgagc
aagatgccatggcagagtgtggagcatgtaggtgaccaaagtccctacgtgacatcagtc
atcatgcacatcaaacagaacgtccccatcatcagagagaacctggcctccacacgaaaa
tacttcacccagttctgcatcaagttcaccaactcttttattcctaaattcatcaaccac
ttgttcaggtgtaagcctatcagcatggtgggggctgaacagctcctcctggacacccac
tccctgaagacggtgttgttggatctgccctctatagggtctcaggtggtccgcaaggcc
ccagccagctacaccaagatagtcgtgaaggggatgacccgcgctgagatgatcctcaag
gtggtcatggccccccatgaacctaccgtggtgtttgtggataactacatcaagctcctc
gctgatggaaacccagagaccttccagaaaactctggatatgaaggggttaaagcgcagt
gagcagagcagcatgttggagctcttcagacagaggttacccgctccaccctcaggggcc
gacggaggcccctctctctccttcagcacccccacccccgagcaggagaactcgcgcata
cgcaaactggagaagctcatcaaaaagagactctga
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