Salmo salar (Atlantic salmon): 106612859
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Entry
106612859 CDS
T04363
Name
(RefSeq) scavenger receptor class F member 1-like
KO
K24318
scavenger receptor class F member 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106612859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106612859
Membrane trafficking [BR:
sasa04131
]
Endocytosis
Phagocytosis
Scavenger receptors
106612859
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_PEAR1L
EGF_Teneurin
EGF_2
Lipase_GDSL_lke
Motif
Other DBs
NCBI-GeneID:
106612859
NCBI-ProteinID:
XP_014069908
LinkDB
All DBs
Position
ssa09:111555937..111564326
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AA seq
964 aa
AA seq
DB search
MKHSQNLNNCNLPLFHEKTVKRNVTHKETSYYALWYVFCLPFSNRDPSTLVCCTGWRQQG
EECTIPVCDGERACQQDEVCVYPGVCRCRPGYYGANCKTRCPPEFWAPDCRELCKCHPHG
RCNPVTGECTCLPNRWGPLCQNACRCGRHGHCHPVHGNCTCDEGWWTPTCTKQCQCYPGT
STCDPLTGRCQCAPGYWGQKCSLRCSCYISSCQQKTGACECQNGWWGQTCDRQCNCDLKH
SECNAVSGECVCQPGYKGAVCNEPCGPGEYGSRCKLSCGHCKRGQSCSVVDGVCTACEPG
WNGTRCDRPCSRGYHGNHCQEACPRCRNGEPCDPRTGACSQCDPGWTGSRCDKPCSNRTF
GDTCRFLCSPCFHGHCDHVTGSCVCGPGFQGQSCNITCPDQLYGFNCSSVCDCEEGSACH
PETGACPYSGHRALIAGLLVPLILVLLGLVCCCCCCGGPTDGKDRVAVGDGGTSVRMKHH
VYNVLANVSSAVPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTDGSSFDSDEE
TGEALYCVPPREDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSVSAEDMSLPFGIPRTSS
NAKSKRPSVSFAEGTRFSPKERRGSAQDLTPGAPRTKPKSPWGVLMLSALQAHGGKASEG
EETETGEGGVDGCGGGTGPLEELGSSGEAGDPDVDRYPATPSQAMSTLQVPGAVVGRRRT
ISNAAVNRKGGQAAGSTSDGQKAEIDKGMDKVTTVYVTVGKAGVGRPLSKLELPSSDGPV
QAMLRRLSSLQRHKDQEGGTRSKGKIPGAEGITKPPRRKLGTRASVWEQGGPVGEGVPMR
KPSRRKQHVHHSSPAVMGNTDDGTNTHPPPEGANATITPTRPLSSILKSVPEVAGLEVRG
ERSAVRGEIGDPGMQTETDSGYLTVGPAGVVTDAVSLSEVANDGVVASVDDGANLYENVM
IMHS
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaaacattctcagaatcttaataattgtaatcttccattatttcatgaaaaaacagtc
aaaagaaatgtgacccataaagaaacttcctactatgctttatggtatgtattttgttta
cccttctcaaacagggatccctccactcttgtctgttgtactggatggagacaacaggga
gaggagtgtactatacctgtgtgtgatggcgagcgggcctgccagcaggatgaggtgtgt
gtttacccaggcgtctgtcgctgtcgacctggctactatggagccaactgcaagacacgc
tgccctccagagttctgggcaccggactgccgtgagctgtgcaagtgccaccctcacggg
cgctgtaaccctgtcacgggcgagtgcacatgcctccccaaccgctgggggccactctgc
cagaacgcctgcagatgtggccgccacgggcactgtcaccctgtgcacggcaactgcacc
tgcgatgagggctggtggacgcccacctgtaccaagcagtgccagtgctacccaggcacc
tccacctgcgacccactgaccggcaggtgtcagtgtgccccagggtactggggtcagaag
tgcagccttcgctgtagctgctacatatcgtcgtgccaacagaagacgggggcgtgcgag
tgccagaacgggtggtggggtcagacgtgtgatcgccagtgtaactgtgacctgaagcac
agcgagtgtaatgccgtcagcggggagtgtgtatgtcagcctgggtacaagggagccgtc
tgtaatgaaccgtgtggacccggggagtatggcagcaggtgtaaactgagctgtggccac
tgtaaacgaggccagtcgtgctctgtggttgacggtgtctgtacggcctgtgagcctggg
tggaacggcacacgctgtgaccggccgtgcagtcggggttaccatggaaaccactgccag
gaggcgtgcccacgctgcaggaacggtgaaccatgtgaccccaggacgggggcgtgttca
caatgtgatccaggatggaccggatccaggtgtgacaagccatgctctaacagaacattc
ggggacacctgccgcttcctgtgcagcccctgtttccatggccactgtgatcacgtgaca
ggaagttgtgtctgtgggcccgggttccagggacagagttgtaacatcacctgtccagac
cagctgtatggctttaactgttcctctgtctgtgactgtgaagagggctccgcctgtcac
ccagaaacgggagcgtgtccatacagtggtcacagggctctgatcgctggtctcctggtc
cctctgatcttggtgctgctgggtctggtctgctgctgctgctgctgtggaggacctact
gacggcaaagacagggtagcagtgggtgacggtggtacctctgtccgtatgaagcatcat
gtgtataacgtcctggccaacgtgagctctgctgtaccctgtatctctgtctggtcctct
gggctacccagagtcacagtgtcccaccacgaccctgagctgacgttcaaccacagtttc
atagagcctccctcctcaggctgggtgacggatggatcctccttcgacagtgatgaggag
accggagaggctctctactgtgtcccccccagagaagacatccctgcagtggcgggcggt
gagttccaggagttccagcatgagatgagttctaagtgtaacatgttccccgacccctct
gccttcagcgttagtgcagaagacatgtccctcccctttggcatcccccgcacctccagc
aacgccaagtccaaacgcccctccgtctccttcgccgaaggcaccaggttcagccccaag
gagcgccgaggctctgcccaggacctgactcccggggccccccgcaccaaacctaagtcc
ccctggggggtcctgatgctgtcagccctccaggcccatggagggaaggcctcagagggg
gaagagacagagacaggtgaggggggtgtggatggatgtggaggtgggactggaccattg
gaagaactaggatccagtggtgaagcaggggaccccgatgtggacaggtaccctgccacc
ccgtcccaagccatgtctactctgcaggtgcctggagcagtagtaggaagaagacgcacc
atatccaatgccgctgttaacagaaagggtgggcaagcagcagggtccacatccgatggc
cagaaggcagagatagataaagggatggacaaggtgaccacagtgtacgtgacagtgggg
aaggcgggggtggggaggcccctgtctaaactagagctccccagctcggatggcccggta
caggccatgctacgcaggctaagcagcctccagagacataaagaccaggaggggggaact
aggtccaagggtaagatcccgggggcggaggggatcaccaagccacccaggaggaagctg
gggactagggccagtgtgtgggagcaggggggtcctgtaggggaaggcgtacctatgagg
aaacccagtaggaggaaacagcacgttcaccacagctcgcctgctgtcatgggaaacact
gatgatggcactaacactcaccccccacctgagggcgccaatgccactattacgcctacg
aggcccctgtcctccattttgaaaagcgtgccagaggtcgctgggttagaagtcaggggt
gaaaggtcagcggtgagaggagagatcggtgaccctgggatgcagactgagactgacagt
ggatatctaacagtcgggccagctggagttgtaaccgacgctgttagtctgagtgaagtc
gccaatgacggagtggtggccagtgtggacgatggagctaacctatatgagaacgtgatg
attatgcattcctaa
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