Salmo salar (Atlantic salmon): 106612933
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Entry
106612933 CDS
T04363
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03030
DNA replication
sasa03420
Nucleotide excision repair
sasa03430
Mismatch repair
sasa03440
Homologous recombination
sasa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106612933
03420 Nucleotide excision repair
106612933
03430 Mismatch repair
106612933
03440 Homologous recombination
106612933
03460 Fanconi anemia pathway
106612933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106612933
03032 DNA replication proteins [BR:
sasa03032
]
106612933
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106612933
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106612933
DNA replication proteins [BR:
sasa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
106612933
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
106612933
MMR (mismatch excision repair)
106612933
DSBR (double strand breaks repair)
HR (homologous recombination)
106612933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
106612933
NCBI-ProteinID:
XP_014070073
UniProt:
A0A1S3T0F2
LinkDB
All DBs
Position
ssa09:114433928..114501310
Genome browser
AA seq
608 aa
AA seq
DB search
MTNMLTMGAIEALTKGSNDLPNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLST
QLNPMAEDNRLSPNCICQLKRNVTNVLKDGRRVVVILDMEVVKSADEVAGKIGEPTPYVE
GQSKAPQSAPNPSVHPLQPQNGNYGTMNKGPSREFGGKKAMPPSAMPSTPGGSSKVVPIA
SLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSI
IETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADL
EAREKDAILDVIGVCKSVADVTRLTTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAENFD
GSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTE
ARTGGGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKK
VVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQ
LKDSNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMN
IRKMAAAQ
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactaacatgctgacaatgggagcgatagaggctctaaccaaaggctctaatgattta
cccaaccccattcttcaattagtgaacatccgtaaaattgatggaggcagtggaccagcc
cgctttcgcctgatgatgagtgatggacagcactcaatgtcctcgttcatgctctccacc
caactcaacccgatggctgaggacaaccgactgtccccaaactgtatctgtcagctgaag
aggaacgtgaccaatgtcctaaaggatggacggcgtgtggtggtcatattagacatggag
gtggtgaagtctgcagatgaggtggctggaaagatcggagagcccacgccttacgtggaa
ggtcagagtaaagccccacagtcagctcccaatccctcagtccaccccctgcagccccag
aatggaaattatggcaccatgaacaaaggtcccagcagagagtttggggggaagaaggcc
atgccgccgtctgcaatgcccagcactcctgggggatcctccaaagtcgtgcccatcgcc
agcctcaacccctaccagtcaaagtggaccatccgagcacgtgtcaccaacaagagcggc
atccgcacctggagcaactctcgtggggacggcaagctgttctctatggagattgtggat
gagagtggagagatcagagtgactgcctttacccaggaggtggacaagttctacagcatc
attgagactggcaaggtgttctacatctccaagggatcattgaagatcgccaacaagcag
tactcgtccctgaagaatgactatgagatgaccctgaatggagagtccaccatcatcccc
tgtgaggacacccaggacgtacccatggtgcagtgcaacttcgtctccatcgctgacctg
gaggcccgagaaaaggacgccattttggatgtgattggagtgtgtaagagcgtggctgac
gtgacccgcctcaccaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatg
gaccagtctggtaaactggtggaggtcaccctgtggggagaggaggcagagaactttgat
ggctctgggcagcccatcttggccatcaaaggggccaagctgtccgactatgggggaaga
tctctgtctgcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatac
aagctgcggggctggtatgacaaggagggccactctatggatggccagtctctgacggag
gcgaggacaggtggaggaggaggagggaacaccaactggaagaccctggctgacatcaag
acggagcacctcggacacggagacaaggcagactacttcagctgcatcgccaccatagtg
tacatccgtaaggagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaag
gtggtggaccagcagaacggcatgttccgctgtgagaagtgtgacaaagagttccccaac
ttcaagtaccgactcatcctctctgccaacatagcagactacggggacaaccagtgggtg
acctgcttccaggagagtgctgaagccatcctgggacagaacgctgcttacctagggcaa
ctcaaagactcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacg
ttcgtcttccgcaacagagtcaagctggagacctacaatgacgagtcccggatcaaggcc
acggtgatggaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaac
atcaggaagatggctgccgcccagtaa
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